PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24419.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | GATA | ||||||||
Protein Properties | Length: 163aa MW: 17669.2 Da PI: 10.2086 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52 | 9.6e-17 | 109 | 144 | 1 | 34 |
GATA 1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs nC++ Tp+WR gp g+k+LCnaCG++yrk + mrna24419.1-v1.0-hybrid 109 CSnfNCRAAATPMWRTGPLGPKSLCNACGIKYRKLK 144 55559****************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.9E-11 | 103 | 148 | No hit | No description |
SMART | SM00401 | 7.1E-11 | 105 | 159 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.65E-8 | 108 | 142 | No hit | No description |
Pfam | PF00320 | 1.3E-14 | 109 | 145 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-12 | 112 | 145 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 10.396 | 113 | 141 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MAALDLTLRL GLPTSTDPQV IPPQQFPLNI YAAPRWAQGF GYGASAGRAH ADEYSATMNL 60 TDFQRSIKEY CLLTVSITQG KVGGSKKRKT PHSDERPVVP RPEDRNRTCS NFNCRAAATP 120 MWRTGPLGPK SLCNACGIKY RKLKLKEKQR EVGASGEGSS SA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24419.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011461845.1 | 7e-73 | PREDICTED: GATA transcription factor 20-like | ||||
STRING | XP_004296301.1 | 1e-66 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 1e-16 | GATA transcription factor 29 |
Link Out ? help Back to Top | |
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Phytozome | mrna24419.1-v1.0-hybrid |