PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24375.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 257aa    MW: 28935.4 Da    PI: 5.0193
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24375.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.31.4e-093377146
                     FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekk 46
                             +fYn+YAk  GFs+r  +sk  k+n+++t++++vCsk+g ++ e +
  mrna24375.1-v1.0-hybrid 33 SFYNRYAK-GGFSTRSYTSKLGKDNTTVTRKEYVCSKQGDSKVEGE 77
                             5******7.6*****************************9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-63377IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MELEDDQLYI PQVKSEVVPK LKQEFETLDE VASFYNRYAK GGFSTRSYTS KLGKDNTTVT  60
RKEYVCSKQG DSKVEGEKLI IFDGLRPSST VANLVELFFG SGLMASRIRL SSGELSFSIV  120
VMDDIFKSGF GWNDVRKCVE VDNDEAWYAY VKNHSDAEGW RGKPFSRFES FATIFGVDRS  180
VGKSAKVPAS IVEEDAEDQE HTELEADQLS TAKFESNNKS PKGNKKDEVR AKKDELWDEL  240
LKLNISTTNR IKALKF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24375.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-