PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24344.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 429aa    MW: 48983.8 Da    PI: 3.9051
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24344.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM57.35.3e-1891432128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknrat 78 
                               pG rF P ++el+ +yLk+ ++g++ l  ++v+ ++d+y   ePw++ +++k+        +k++yfF++++k ++t+k  +r++
  mrna24344.1-v1.0-hybrid   9 LPGERFCPLEDELLLFYLKPMLSGQNvLGRNSVVFDCDLYGPqEPWEIWEAYKTrrpndlrLNKDLYFFTQHKKMSSTDKCIRRTV 94 
                              589***********************545556799****98559****743333234333334588******************** PP

                      NAM  79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                               sg+Wk   ++k+v+s  +g+++g  k +++   ++++ ++  W++ e+ l
  mrna24344.1-v1.0-hybrid  95 GSGTWKGNESEKPVKSFeTGRVIGSEKKFTYE--NEESDHHGCWILFEFYL 143
                              **************99768899********98..444456999*****976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-217163IPR003441NAC domain
PROSITE profilePS5100525.0348165IPR003441NAC domain
PfamPF023651.5E-1110142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MEEIRNNQLP GERFCPLEDE LLLFYLKPML SGQNVLGRNS VVFDCDLYGP QEPWEIWEAY  60
KTRRPNDLRL NKDLYFFTQH KKMSSTDKCI RRTVGSGTWK GNESEKPVKS FETGRVIGSE  120
KKFTYENEES DHHGCWILFE FYLDRSLRDK KEKVKDYILC LLRKNGEPKT KIEKKRKQRE  180
EEEVLENNDE CDDGEQSNTE KEELLEPQAK RQRNVSAPPV PMPSEDDAFV AELEESLECV  240
QDDNSPPLEA EAIGFQGMED GGLQQLACEV QSGPPFVPLP EDDFVLDEDL FEEIYNYVET  300
EEQDPAGSNN LCEGLMDFED GDGLVWINSI SFSPMSSEED DAFVAELEES LEYVQDDNSP  360
SSEAELIGYQ GAENGGLQQL ACEVQSDPSF VPLPEDDFVL DEKFFEEIYN YVETEEQDPA  420
GSNNLCEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167176PKTKIEKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24344.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011468607.10.0PREDICTED: protein ATAF2-like
TrEMBLA0A2P6PR551e-143A0A2P6PR55_ROSCH; Putative transcription factor NAM family
STRINGXP_004306296.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.29e-13NAC domain containing protein 38