PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24344.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 429aa MW: 48983.8 Da PI: 3.9051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 57.3 | 5.3e-18 | 9 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknrat 78 pG rF P ++el+ +yLk+ ++g++ l ++v+ ++d+y ePw++ +++k+ +k++yfF++++k ++t+k +r++ mrna24344.1-v1.0-hybrid 9 LPGERFCPLEDELLLFYLKPMLSGQNvLGRNSVVFDCDLYGPqEPWEIWEAYKTrrpndlrLNKDLYFFTQHKKMSSTDKCIRRTV 94 589***********************545556799****98559****743333234333334588******************** PP NAM 79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wk ++k+v+s +g+++g k +++ ++++ ++ W++ e+ l mrna24344.1-v1.0-hybrid 95 GSGTWKGNESEKPVKSFeTGRVIGSEKKFTYE--NEESDHHGCWILFEFYL 143 **************99768899********98..444456999*****976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-21 | 7 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.034 | 8 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-11 | 10 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MEEIRNNQLP GERFCPLEDE LLLFYLKPML SGQNVLGRNS VVFDCDLYGP QEPWEIWEAY 60 KTRRPNDLRL NKDLYFFTQH KKMSSTDKCI RRTVGSGTWK GNESEKPVKS FETGRVIGSE 120 KKFTYENEES DHHGCWILFE FYLDRSLRDK KEKVKDYILC LLRKNGEPKT KIEKKRKQRE 180 EEEVLENNDE CDDGEQSNTE KEELLEPQAK RQRNVSAPPV PMPSEDDAFV AELEESLECV 240 QDDNSPPLEA EAIGFQGMED GGLQQLACEV QSGPPFVPLP EDDFVLDEDL FEEIYNYVET 300 EEQDPAGSNN LCEGLMDFED GDGLVWINSI SFSPMSSEED DAFVAELEES LEYVQDDNSP 360 SSEAELIGYQ GAENGGLQQL ACEVQSDPSF VPLPEDDFVL DEKFFEEIYN YVETEEQDPA 420 GSNNLCEG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 176 | PKTKIEKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24344.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468607.1 | 0.0 | PREDICTED: protein ATAF2-like | ||||
TrEMBL | A0A2P6PR55 | 1e-143 | A0A2P6PR55_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004306296.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 9e-13 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | mrna24344.1-v1.0-hybrid |