PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24342.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 445aa    MW: 50327 Da    PI: 4.2807
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24342.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM774.3e-2491412128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknrat 78 
                               pG+rF P ++el+ +yLk+ ++g++ l  ++v+ ++d+y   ePw++ +++k+        +k++yfF++++k ++t+kr +r++
  mrna24342.1-v1.0-hybrid   9 LPGVRFCPMEDELLLFYLKPMLSGQNvLGRNKVVFDCDLYGQqEPWEIWEAYKTkrpndlrLHKDLYFFTQHKKMKSTDKRIRRTV 94 
                              59************************655566799***996549****742222224333334588******************** PP

                      NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               sg+Wk   + k+v+s +g+++glkk +++   ++++ ++  W++he+ l
  mrna24342.1-v1.0-hybrid  95 GSGTWKGNDSGKPVKS-SGRKIGLKKRFTYG--NEKSKHHGCWILHEFYL 141
                              ****************.9999********96..55555699*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-277162IPR003441NAC domain
PROSITE profilePS5100528.2398163IPR003441NAC domain
PfamPF023656.0E-1510140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MEEIRNNQLP GVRFCPMEDE LLLFYLKPML SGQNVLGRNK VVFDCDLYGQ QEPWEIWEAY  60
KTKRPNDLRL HKDLYFFTQH KKMKSTDKRI RRTVGSGTWK GNDSGKPVKS SGRKIGLKKR  120
FTYGNEKSKH HGCWILHEFY LDPSLRDKKE KVKDYVLCVL RKNDESKSKI EKKRKQREEE  180
DFLDENDACD DGEQSNMEQE GLLETQAKRQ RTVCPVPTPS EVDAFIASLE GSMECVQDDN  240
SPPSEAEAIG FQGVEDGGLQ QLALEVQSGP SFVPLPEEDF LMEQCFEELR NYEEREEQDP  300
AGSNNVCGPP VPTPSEVDAI FIAELEGSME CVQNDFSRPS KAEAIGFQGV EDGGIQQLAC  360
ELQSGPSFVP LPEEAFLMEQ CFEELRNYEE TEEQDPAGSN NICGGLIDHN SDDWINSISF  420
SPEDNDFVSC EMLSSFFADT AGLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-151016919171NO APICAL MERISTEM PROTEIN
1ut4_B2e-151016919171NO APICAL MERISTEM PROTEIN
1ut7_A2e-151016919171NO APICAL MERISTEM PROTEIN
1ut7_B2e-151016919171NO APICAL MERISTEM PROTEIN
3swm_A2e-151016922174NAC domain-containing protein 19
3swm_B2e-151016922174NAC domain-containing protein 19
3swm_C2e-151016922174NAC domain-containing protein 19
3swm_D2e-151016922174NAC domain-containing protein 19
3swp_A2e-151016922174NAC domain-containing protein 19
3swp_B2e-151016922174NAC domain-containing protein 19
3swp_C2e-151016922174NAC domain-containing protein 19
3swp_D2e-151016922174NAC domain-containing protein 19
4dul_A2e-151016919171NAC domain-containing protein 19
4dul_B2e-151016919171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24342.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306296.10.0PREDICTED: NAC domain-containing protein 67-like
TrEMBLA0A2P6PAF81e-144A0A2P6PAF8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306296.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.15e-17NAC family protein