PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24287.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 421aa    MW: 48319.4 Da    PI: 4.832
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24287.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM362.1e-11541716110
                      NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiy...kvePwdLpkkvka...eekew.yfFskrdkkyatgkrknra..tk..s 80 
                               F+P++ el+  yL  kv   + +   +++e+ iy    + Pw+L +++++   ++++  yfFs+++k +++++r++r   t+   
  mrna24287.1-v1.0-hybrid  54 TFQPSETELL-GYLYDKVFIATYKQ--TFPEICIYgkdALPPWELWRMYQQskfSHQDFiYFFSRAEKLNPNKSRNSRRlgTDgeL 136
                              6*********.99****99999665..45666555111568****742222223333335**************999963432448 PP

                      NAM  81 gyWkatgkdkevlsk.kgelvglkktLvfy....k 110
                              g+W+at k k++++   +e+ g  + + +     +
  mrna24287.1-v1.0-hybrid 137 GTWSATEKFKPIYVDgVQEAFGSLRKFRYEkstsR 171
                              99***********9743445677777777633330 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-1345216IPR003441NAC domain
PROSITE profilePS5100514.10549217IPR003441NAC domain
PfamPF023653.1E-754202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MTCRRTGIAS RISPRSPGPR RSDTQGRRQC RGWWGSSPTK FATLDELNVG VVTTFQPSET  60
ELLGYLYDKV FIATYKQTFP EICIYGKDAL PPWELWRMYQ QSKFSHQDFI YFFSRAEKLN  120
PNKSRNSRRL GTDGELGTWS ATEKFKPIYV DGVQEAFGSL RKFRYEKSTS RNDKDKNEKN  180
KNNVHTQICD EHHGAWLMDE FTIKHAPDLA LCRIKVNDKG GDRNKRAEKN DEDESLRSKK  240
RKLEPRTSVQ NSCMSEQQGG TTSQQMPSSY FHQDDQVAQV VPENSCNNFP DELEQILMSN  300
DDENLVFSPS TVLLNDAQLW SSIAQSIPNE QQPIQEQYSD YSVAPQQQLE PESRCQEEYQ  360
VQLPQQDQAS SSHSNMQQLL ADNDLMIDFD SLDDTYLQSF IKGILADEDQ PSTDGDQFQF  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24287.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011464579.11e-162PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464580.11e-162PREDICTED: NAC domain-containing protein 102-like isoform X1
RefseqXP_011464581.11e-162PREDICTED: NAC domain-containing protein 102-like isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1646726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.13e-06NAC family protein