PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna24269.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

G2-like

Protein Properties

Length: 327aa MW: 36548.7 Da PI: 5.797

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna24269.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.8	7.6e-31	62	115	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 rlrWt++LH++F++av+qLGG++kAtPk+i+++m+v+gLtl +vkSHLQkYRl mrna24269.1-v1.0-hybrid 62 SRLRWTSDLHASFLDAVSQLGGPHKATPKSIMHIMGVQGLTLFQVKSHLQKYRL 115 69***************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.6E-16	61	115	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-25	61	116	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.7E-27	62	115	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-7	63	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MFGCEEEQGL QGPRAPNMDH GVAEGEEEEE EVEQEESSND HSDSHIKPVA PPYVPPCYKL 60 NSRLRWTSDL HASFLDAVSQ LGGPHKATPK SIMHIMGVQG LTLFQVKSHL QKYRLGKYGM 120 KEWREGSSSR TEDTVSQVLK RQETVTSTPS LSLLLPHENE NWNAGRKLKR NFVCEMRQVQ 180 KHLQLRQEAQ SRYLSRAVEN ACEKLAHQFL GGCAADYAGV FEQNAAGVEI MGSKPHQKDL 240 HLNPAYHMTQ TMQLSFENQI ASSQPPSEAH FATGDHLISD EHSRNSSVQH LLTFKIDVNR 300 EDESLVDDPA EAYLILDTSE MGSGKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	62	118	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	62	118	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	62	118	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	62	118	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	62	118	3	59	Protein PHOSPHATE STARVATION RESPONSE 1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna24269.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011467632.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1
Refseq	XP_011467633.1	0.0	PREDICTED: myb family transcription factor APL-like isoform X1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25921	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.2	1e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	mrna24269.1-v1.0-hybrid