PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24216.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 591aa    MW: 65768.7 Da    PI: 6.9468
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24216.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.4e-23141225290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              +Y+eYA++vGF +++ +s++skr+g++++ ++ Cs++ k+e  +++    +++ +  +tgCka l++kk++++kw+++++++eHnH
  mrna24216.1-v1.0-hybrid 141 YYREYARSVGFGITIIASRRSKRTGKFIDIKLACSRYRKQEAGDRE----KQSVNLINTGCKAGLHMKKRENEKWYIHSFNKEHNH 222
                              9*************************************99998777....999999****************************** PP

                     FAR1  88 ela 90 
                              e++
  mrna24216.1-v1.0-hybrid 223 EMT 225
                              986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-20141225IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.79280316IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4281314IPR007527Zinc finger, SWIM-type
SMARTSM005757.4E-6291318IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEIDLELPSC EQDKLDTRLN EDVNVVDATD EINVGKKSEN VKEAHGLSTN ESVDDANNVE  60
VSVVDKGVVG IVDAGDEMNV EKSSEHVWEA GGSSANKSGS DFQGPGDVNN VVVNVVDKAV  120
GVVRELEIGL EFETKEDAYS YYREYARSVG FGITIIASRR SKRTGKFIDI KLACSRYRKQ  180
EAGDREKQSV NLINTGCKAG LHMKKRENEK WYIHSFNKEH NHEMTDGFIV PGGRNKRPAT  240
VACQKKGLQF SLDEDDVKKD GHDEATVIFR VHDLEERQNF FVAWNEPESR VCCLCHSFEY  300
KGLLCRHALL VLHMSGVSSI PSNYILKRWM KDARVGHTVS DVSKSLNYRV QRFNDLCKLA  360
VKLGEQGSLS PETYQIACHT LEEVLKQCVH INKSVRGVSE PNASSIHGSN DVEEEKYSGA  420
MVKLSKKKKT HRKRKGETEP DGIPVRFQDS RQKMELINSG VHNLDSCRVS QQESQGELGS  480
KGCAQDSCYG AQQIMQEMGR LNSVSPIHDG SYGNQQASQG LLHTLPPRVG LYGTQQSMQG  540
MFQGQLGFRA PAVHSSFDIR DTLKDMEQSA GTSRFHGNTS KHPHNKHLPQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426430KKKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24216.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303948.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X1
TrEMBLA0A251Q2441e-129A0A251Q244_PRUPE; Uncharacterized protein
STRINGXP_004303948.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.31e-63FAR1-related sequence 2