PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24215.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 527aa    MW: 59378.5 Da    PI: 6.7559
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24215.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.45e-2876163191
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 
                              +fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++    ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHn
  mrna24215.1-v1.0-hybrid  76 SFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSG---SSRRPTVKKTDCKASMHVKRRADGKWIIHEFIKEHN 158
                              5****************************************999888...77888899**************************** PP

                     FAR1  87 Helap 91 
                              Hel p
  mrna24215.1-v1.0-hybrid 159 HELLP 163
                              **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2576163IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.225255291IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-6262288IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-7266293IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MDENRRLVGI LVDGQDNMND GRVIENMIVV PLVEEAQNSG GGVVSSPKRD VQLFEGDADL  60
EPKNGIEFDS HEAAYSFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD  120
SGSSRRPTVK KTDCKASMHV KRRADGKWII HEFIKEHNHE LLPALAYHFR IHRNVKLAEK  180
NNMDILQAVS ERTRKMYVEM SRQSGGYQNT GFVRADTKKF QVEVLGVVGC QPKKEHEDGL  240
TTTFRVQDCE KEEYFMVTWT ESKSEVSCSC RLFEYKGFLC RHSLIVLQIC GLSSIPPHYI  300
LKRWTKDAKS GQLILEGSEL VQTRVQRYND LCKRAIELSE EGSLSEETYN IALRTLVEAL  360
KNCVNVNNSN TTVVDFSSSV HSIREAEEEN QGSLAAKPGR KRNTNRKRKV QAEQDVMIGE  420
AQDSLQQMDN LSSDGIALSG YYGAQHGLVQ LNLMEPPHDN YYVNQESMQG LGQLNSIAPN  480
DDGFFGTQQI HGLGQLDFRP SSSFSYSLQD EPHLRSSELH GSSSRH*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24215.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4478221e-138AM447822.2 Vitis vinifera contig VV78X040981.18, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305896.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
RefseqXP_011467678.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1
SwissprotQ9SWG31e-122FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBLA0A0B0NR120.0A0A0B0NR12_GOSAR; Far-red impaired response 1-like protein
STRINGXP_004305896.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-107FAR1 family protein
Publications ? help Back to Top
  1. Domergue F, et al.
    Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition.
    Plant Physiol., 2010. 153(4): p. 1539-54
    [PMID:20571114]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  4. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  5. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  6. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]