PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24214.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 615aa    MW: 69636.7 Da    PI: 6.3034
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24214.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.32e-2689191190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekd 73 
                              +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+              e++  +r+ ++t+Cka+++vk+++d
  mrna24214.1-v1.0-hybrid  89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKTynnkprarqskqdPENATGRRSCSKTDCKASMHVKRRSD 174
                              5******************************************999999999988776555555559999**************** PP

                     FAR1  74 gkwevtkleleHnHela 90 
                              gkw+++++++eHnH l 
  mrna24214.1-v1.0-hybrid 175 GKWVIHNFVKEHNHGLL 191
                              **************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-2489192IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MDIDLRLPSG DHDKEDEEPN AIDNMLEHEE KMHNGDIESA HIVDDRDEVH AEDGGDLNSP  60
TADMVIFNED TNLEPLFGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK  120
FACSRYGTKR EYDKTYNNKP RARQSKQDPE NATGRRSCSK TDCKASMHVK RRSDGKWVIH  180
NFVKEHNHGL LPAQAVSEQT RKMYAAMARQ FAEYKNVVGL KNDPKNPFDK GRNLSLEAGD  240
LKMLLEFFTH MQSMNSNFFY AIDLGEDQCL KTLLWKTTVQ EFLKQYGAIL QDRYEEEAKA  300
DSDMWNKQPT TKSPSPLEKS VSLIYTPSVL KKFQVEVLGA IGCNPKRDRQ DEMTTTYRVH  360
DCEKNQDFTI GTIPDQYILK RWTKDAKSRH LVVQEPGDVP SRVQKFDDLS QRAMKLIGEG  420
SLSQESYTIV CHALEEAFGN CLAVNNSSKS LVEAGTSGTQ GLPCIEDDIQ NRSIGKGSKK  480
KNPTKKRKVN SEPEVMTVGA QESLQQMDKL NSRAITIDGY YGGQQNVQGM VQLNLMAPTR  540
DNYYGNQVNQ QTIQGLGQLN SIAPSHPSHE SYYSAQQSMH GLGQMEFFRT GFTYIRDDPN  600
VRTAPLHDDA SRHA*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24214.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011467677.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3
SwissprotQ9LIE51e-129FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLA0A1R3IYV40.0A0A1R3IYV4_9ROSI; Uncharacterized protein
STRINGXP_004303947.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-131far-red elongated hypocotyls 3
Publications ? help Back to Top
  1. Chang N,Gao Y,Zhao L,Liu X,Gao H
    Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel.
    Sci Rep, 2015. 5: p. 9612
    [PMID:25872642]
  2. Wang C, et al.
    SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes.
    J Genet Genomics, 2015. 42(4): p. 161-8
    [PMID:25953354]
  3. Wang W, et al.
    A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis.
    J Integr Plant Biol, 2016. 58(1): p. 91-103
    [PMID:25989254]
  4. Ma L, et al.
    Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1.
    Mol Plant, 2016. 9(4): p. 541-57
    [PMID:26714049]
  5. Siddiqui H,Khan S,Rhodes BM,Devlin PF
    FHY3 and FAR1 Act Downstream of Light Stable Phytochromes.
    Front Plant Sci, 2016. 7: p. 175
    [PMID:26941752]
  6. Li D, et al.
    FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80
    [PMID:27469166]
  7. Liu L,Li B,Liu X
    FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis.
    Plant Signal Behav, 2016. 11(10): p. e1238545
    [PMID:27660915]
  8. Ma L,Xue N,Fu X,Zhang H,Li G
    Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar.
    New Phytol., 2017. 213(4): p. 1682-1696
    [PMID:27859295]
  9. Liu Y, et al.
    Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1.
    Plant Cell, 2017. 29(9): p. 2269-2284
    [PMID:28842534]
  10. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]