PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24214.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 615aa MW: 69636.7 Da PI: 6.3034 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.3 | 2e-26 | 89 | 191 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekd 73 +fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +r+ ++t+Cka+++vk+++d mrna24214.1-v1.0-hybrid 89 SFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKTynnkprarqskqdPENATGRRSCSKTDCKASMHVKRRSD 174 5******************************************999999999988776555555559999**************** PP FAR1 74 gkwevtkleleHnHela 90 gkw+++++++eHnH l mrna24214.1-v1.0-hybrid 175 GKWVIHNFVKEHNHGLL 191 **************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.9E-24 | 89 | 192 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MDIDLRLPSG DHDKEDEEPN AIDNMLEHEE KMHNGDIESA HIVDDRDEVH AEDGGDLNSP 60 TADMVIFNED TNLEPLFGME FESHGEAYSF YQEYARSMGF NTAIQNSRRS KTSREFIDAK 120 FACSRYGTKR EYDKTYNNKP RARQSKQDPE NATGRRSCSK TDCKASMHVK RRSDGKWVIH 180 NFVKEHNHGL LPAQAVSEQT RKMYAAMARQ FAEYKNVVGL KNDPKNPFDK GRNLSLEAGD 240 LKMLLEFFTH MQSMNSNFFY AIDLGEDQCL KTLLWKTTVQ EFLKQYGAIL QDRYEEEAKA 300 DSDMWNKQPT TKSPSPLEKS VSLIYTPSVL KKFQVEVLGA IGCNPKRDRQ DEMTTTYRVH 360 DCEKNQDFTI GTIPDQYILK RWTKDAKSRH LVVQEPGDVP SRVQKFDDLS QRAMKLIGEG 420 SLSQESYTIV CHALEEAFGN CLAVNNSSKS LVEAGTSGTQ GLPCIEDDIQ NRSIGKGSKK 480 KNPTKKRKVN SEPEVMTVGA QESLQQMDKL NSRAITIDGY YGGQQNVQGM VQLNLMAPTR 540 DNYYGNQVNQ QTIQGLGQLN SIAPSHPSHE SYYSAQQSMH GLGQMEFFRT GFTYIRDDPN 600 VRTAPLHDDA SRHA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24214.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011467677.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Swissprot | Q9LIE5 | 1e-129 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A1R3IYV4 | 0.0 | A0A1R3IYV4_9ROSI; Uncharacterized protein | ||||
STRING | XP_004303947.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 1e-131 | far-red elongated hypocotyls 3 |
Link Out ? help Back to Top | |
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Phytozome | mrna24214.1-v1.0-hybrid |