PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24179.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 807aa    MW: 90563 Da    PI: 7.5662
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24179.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.39.1e-5171311128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lp+GfrFhPtdeelv++yL kk++++++++  +ike+d+yk++Pw+Lp+++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkat
  mrna24179.1-v1.0-hybrid   7 LPAGFRFHPTDEELVNHYLIKKCASQNISV-PIIKEIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKAT 91 
                              799***************************.88***************7666789******************************* PP

                      NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk++ +   ++ g+kk Lvfy g+apkg+kt+W+mheyrl
  mrna24179.1-v1.0-hybrid  92 GADKHIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 131
                              ******98..778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-604158IPR003441NAC domain
PROSITE profilePS5100558.97158IPR003441NAC domain
PfamPF023653.2E-268131IPR003441NAC domain
Gene3DG3DSA:2.40.70.102.0E-39383567IPR021109Aspartic peptidase domain
SuperFamilySSF506301.88E-64390698IPR021109Aspartic peptidase domain
PROSITE profilePS5176719.823398761IPR033121Peptidase family A1 domain
PfamPF145431.6E-46398567IPR032861Xylanase inhibitor, N-terminal
Gene3DG3DSA:2.40.70.101.5E-6575696IPR021109Aspartic peptidase domain
PfamPF145417.2E-5606695IPR032799Xylanase inhibitor, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MKAELDLPAG FRFHPTDEEL VNHYLIKKCA SQNISVPIIK EIDLYKFDPW QLPEMALYGE  60
KEWYFFSPRD RKYPNGSRPN RAAGTGYWKA TGADKHIGKP KALGIKKALV FYAGKAPKGV  120
KTNWIMHEYR LANVDRSASK KNHNLRLDDW VLCRIYNKKG SIEKYNTATV ERNRFPTYSE  180
IMDHEEKPEL KNIQFNVAPS QVPQMPSAVA PVTQHTDVLS GDYSAPRLQH TQHTTDYSSC  240
SDHVFSPEVQ SEFQWTSSPE FSELDNSMNM NFLESNDQFN YMDGFSLADI DDPFGNQAQA  300
QAQTQYQMDQ QDLFILCEYA MSPISGYQGP EMAGKWLLLM LVLVMGWSVT LTSASFGDRY  360
RGRKAFLPAE ATSSLAISRA PSSVVLPVHG NVYPIGSYNV TLNIGQPPKP YFLDPDTGSD  420
LTWLQCDAPC VRCTEAPHPY YRPNNDLVVC RDPLCASLHA PGAHKCDNPE QCDYEVEYAD  480
GGSSLGVLVR DAFHLNFTNG IQQAPHLALG CGYDQLPGSS YHPIDGVLGL GKGKSSIVSQ  540
LASQGLVRNV VGHCLSSRGG GFFIFGDDLY DYSRAVWTPM SPDYSKHYSP GSAELIFDGK  600
TTGMRNLHLV FDSGSSYTYL NSQAYHFLTL WLKRELNGKP LKETSDDRTL PLCWKGRKPF  660
KNIREVKKYF KPIALRFAIG RKDAAQFELS PEAYLIISMA LKLAYKIQTS LENLEPDILS  720
KKKKRKVRNF STRNSSFLSN SGFVFPVTAI AKPENVLIDV EKLDIKLSGF DVARPMWSLL  780
VDPSQNLNLK LLLWVVEASL PLNLLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-77216410174Stress-induced transcription factor NAC1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720725KKKKRK
2721726KKKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24179.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844490.0KP784449.1 Rosa chinensis putative NAC-4 protein mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-102NAC family protein