PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24052.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family B3
Protein Properties Length: 2321aa    MW: 263506 Da    PI: 7.8729
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24052.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.51.1e-1719562046199
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                       B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84  
                               f+k l++s+v +  ++ lp  f+++h  +  +++t+tlede gr+ + k+i +k++    l++GW++F+ +++L egD++vF+l
  mrna24052.1-v1.0-hybrid 1956 FVKSLLRSHVASCFWMGLPSLFCKSHLPD--KDITMTLEDEGGRQLQSKYIACKTG----LSAGWRQFAASHKLLEGDVLVFQL 2033
                               89************************644..678****************777776....***********************9 PP

                               -SSSEE..EEEEE-S CS
                       B3   85 dgrsefelvvkvfrk 99  
                               ++  +f  +v v+r+
  mrna24052.1-v1.0-hybrid 2034 VEPAKF--KVYVIRS 2046
                               875555..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813838.24E-9320363IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.8E-10321362IPR032675Leucine-rich repeat domain, L domain-like
PfamPF006469.2E-5322356IPR001810F-box domain
SMARTSM002560.012326366IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.8E-10433615IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520477.06E-6469621No hitNo description
PfamPF083872.4E-4633670IPR006566FBD domain
SuperFamilySSF813833.27E-10836886IPR001810F-box domain
PROSITE profilePS501818.703836872IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.5E-14836872IPR032675Leucine-rich repeat domain, L domain-like
PfamPF006461.8E-4838873IPR001810F-box domain
SMARTSM002560.037842882IPR001810F-box domain
Gene3DG3DSA:3.80.10.101.5E-149431169IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520472.75E-119721182No hitNo description
PfamPF083871.2E-513491387IPR006566FBD domain
SuperFamilySSF813832.75E-814281466IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.3E-1114281469IPR032675Leucine-rich repeat domain, L domain-like
PfamPF006460.001214311463IPR001810F-box domain
SMARTSM002560.01314331472IPR001810F-box domain
Gene3DG3DSA:3.80.10.102.3E-1115221750IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.1E-615791751No hitNo description
Gene3DG3DSA:2.40.330.105.0E-1919482047IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-2219492047IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-2319542045No hitNo description
SMARTSM010192.0E-2019562047IPR003340B3 DNA binding domain
PROSITE profilePS5086312.43519562047IPR003340B3 DNA binding domain
PfamPF023623.7E-1519562046IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 2321 aa     Download sequence    Send to blast
MSKTAAKFFP SYSDPPSATF KILHSDYCRC RVIGSSLFVL PTSSTEPTNS LGLFNSAFAT  60
SMASNELEAQ LLEIGNQLLE PPSTVEELLP LLDRIERCLT KVGQSPNKSM QAALSPSQKA  120
LVAEQLLRHS DPHVKVSVAS CITEITRITA PDAPYDDDPM KEAFQLIVST FENLQNKPSR  180
SYTKTTYILE TVARVRSCDL MLDLECDELI VEMFQHFLKA IRGYHPVSVI SSMENIITLV  240
IEECEDVSCQ LLAPLLASVK NVEEEVETHG IALADYSKVV ASICSESAGD TEKNGVHDDK  300
DMGGYNLRGR KKKDVDLNMF DRISGLPDEI LTSILSLLPL REAQATRILS RRWQHVWPYC  360
TTLNFNAGRQ LITFGKLQFD WERELVLRMY VDWVDSVLKQ HKAPNIERFR VAFGHGPRSC  420
IDDWIQFAMR KGVQILEMDL SAILHPRGLH YKLSNKVLGI REFSSFKALC SEYIGFKFLK  480
VLDFNCVDVD QGILEYFIYN CPVLERVAVC DSSLLVNLRV VGQSIALKYL TIHRCRNLKS  540
VEICEANLVS FTYGGELEKL LLRNLPLLVE WAETDSLPNL KCLELAFDEA NNCALLDVAF  600
FIKQTPCLHT LVMKFRSRWS PKSPFSKKRP KRCSFDSLKV VKFVEYSGLS RQIELVKYLM  660
KTASNIEKII FDPVNRQYSG NGYWNMGKLN SVLDHETVNV IKGIPLPTIV ASDEFVWRPA  720
ADGRFSIRSA TWLQWFYTFD ELFLSQFRKG HDKFVAEDCI ISSMLRRIKN TIQKSQWVEI  780
STMEEVTPIL MSQWHPPQKT SPNSILMRLD AFNLDSLNGG YHMKERKKKD VAGNMEDRIS  840
GLPDEILVSI LSLLSLKEAQ ATSILSRRWH YVWAFSTTLN FDAEQRLIRF CKPKSDRERE  900
LGLCMYVDWV DSVLNQHRVA NIERFRIAFE LGPRSCIDKW IQFAMRKGVQ ILELDLSAIL  960
YPWGLQYKFS NQVLGISEFS SFKALCSEYI GFKFLKVLDF NRVDVDQDIL EYFIYNCPVL  1020
ERVAVCDSSL MVNLRVVGQS IALKYLTIQQ CLNLKSIEIC EANLISFTYG GDLEKLLLRN  1080
LPLLVEISLS GMTRITGWSA KIDFSYLSCC LSQLEILKIN YIILWGETDP VIPSLPNLKC  1140
LELAFDEDNN YALLHIAFFI KQTPCLHTLV MKFRSWRCPK NPFAKKRAAR YSHDCLKVVK  1200
FLEYSGLSRQ IELVKYLMKT ASNLEKIIFD PVNRQYSGVH RLLFPHIVEM EELSRAEAHQ  1260
LKEKLPATLD VVCHAPPPLE DSSSVVDHFL SPASPFFSSF PVLGDLTGEG KWLGTLLESS  1320
GVEARRHRRR RFRSWRCQKS PFAKKRAARC SHDCLKVVKL VGYCGLSRHI ELVKYLMKTA  1380
STLEKIILDP VDRQCSEGDS AAGSWFFSTH FRFTMVESDI KDFGSMVDRT SGLPDEILVS  1440
ILSLLSLKEA QATSILSRRW QYVWAYCITL NFAEKILVRF RELDREAREL ERCRYVNWVD  1500
SVLKQHRAVN IELFRVAFNR GPRSSIDEWI QLAMRKGVQM LELDFSAHAP LLDEKYRFSG  1560
KLFGIGETSG LESSCSEYIG FKCLKVLDLK SVEVDQVVPE YFISNCPVLE RLAVYKSYSL  1620
VNLRVVGQSI ALKYLVIQKC FGIESIEISD ANLVSFIYEG GLENLLLRNL PLLVEISLLE  1680
GLICYDLKIA SRSLSCCLSQ LEILKLKDPV IPKLPNLKRL ELEFDDNDNY ALLHLASFIK  1740
ESPCLHTLVL KEELSRAQAR QLKKKLTATV EVVCLKRLNE VWPKECMAKA TSQQLGSPLT  1800
GGGKQGGARV GGKGLQIPFS SESPPLVSSE EHNLMGPNIR KGTPQRTEKK ENKPKTPPSK  1860
PKPKPTTKRV PTPPGNQKKT NKLNEKEVEH SLPMKELSNT QMLEQAALGH SGKSTPSSTQ  1920
YDILIEGSPS RGQAKSSAII RAQEVRSKLD PTFPSFVKSL LRSHVASCFW MGLPSLFCKS  1980
HLPDKDITMT LEDEGGRQLQ SKYIACKTGL SAGWRQFAAS HKLLEGDVLV FQLVEPAKFK  2040
VYVIRSNDFT EVDGALGLLN LDAQTKHNDA GMFLNSYKDN AEPGAVACNE SNRKRTKSPP  2100
EVVQKKKKID LPVEYSEIDS EETDSEVVEN SRLPGTTLQF EDIKSYENFN ILVNGLLVDS  2160
EFPEDIRIKY YKLCCSQNAF LHENVMKGTD YKLIVGAIVE TVHIVDAIKA CQITTTQDDF  2220
VCWDRYLRAF ELLGMNVGFI RVRLCRLANL AFDSEDAMDA KTYKEARKER ARAGLGLRNI  2280
ETKIQELREA CHDFSSAIES LRSKAEVYNH RFQEEVTAPW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5frp_A6e-147625228192SISTER CHROMATID COHESION PROTEIN PDS5
5frp_B6e-147625228192SISTER CHROMATID COHESION PROTEIN PDS5
5frr_A6e-147625228192SISTER CHROMATID COHESION PROTEIN PDS5
5frr_B6e-147625228192SISTER CHROMATID COHESION PROTEIN PDS5
5frs_A6e-147625228192SISTER CHROMATID COHESION PROTEIN PDS5
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
120922107RKRTKSPPEVVQKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24052.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-35B3 family protein