PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24047.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 200aa MW: 21764.1 Da PI: 8.0302 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 23.1 | 2.4e-07 | 58 | 87 | 2 | 31 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkr 31 fYneYA+++GFsvrk++ k+k++ge+ ++ mrna24047.1-v1.0-hybrid 58 FYNEYARKMGFSVRKEQVVKNKKTGEVLSK 87 9************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-4 | 58 | 87 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MSGDSTLGQG SFHRPPSIMS AMALRDITNI GGESSLADTS CKPKFGMEFD SEEAAYIFYN 60 EYARKMGFSV RKEQVVKNKK TGEVLSKFID SYEEEDEFQL LGMRCSRSIM CMEMNGSKEF 120 LNDADVQENG SKTGRQASGG RKNSETTSRP AQSSEEVIAN ISTDNVADVQ ANGSKRRRQA 180 SGGRKSTKTT SQTSPSSKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24047.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468393.1 | 1e-37 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004304854.1 | 6e-49 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 2e-10 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna24047.1-v1.0-hybrid |