PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24036.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 291aa    MW: 32014.6 Da    PI: 6.1845
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24036.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.6e-35101012102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k++++++d++ +++isw+e+g++fvv+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++F+
  mrna24036.1-v1.0-hybrid  10 FLMKTFQLVDDPASDDVISWNESGTAFVVWKTVDFARDMLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANDNFR 86 
                              9***************************************************************9999.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+kell++i+r+k 
  mrna24036.1-v1.0-hybrid  87 RGEKELLSEIRRRKA 101
                              ************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-36393IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-55699IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-32799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.9E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-191033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-194860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-196173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAQRSVPAPF LMKTFQLVDD PASDDVISWN ESGTAFVVWK TVDFARDMLP NYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANDNFRRGEK ELLSEIRRRK AVTSSPAQAT AVEKSGGDTG  120
SNSGEDLAST STSSPDSKNP GSVETAVAVG HTADLSDENE KLKKDNETLS SELAQTKKQC  180
DELVAFLMEY MKVGPDQINK IMRQGSFGSS CDGDDHERGT GENDNDEKVV AGEEEGLKLF  240
GVWVKGKENE EKKKRREEKS GGGGGGPQAK KIKMAEFHAR PLRKSGKVCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2459925129Heat shock factor protein 1
5d5v_B7e-2459925129Heat shock factor protein 1
5d5v_D7e-2459925129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251255KKKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24036.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288037.10.0PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-105HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A1B0VC180.0A0A1B0VC18_FRAVE; Heat shock factor B1a
STRINGXP_004288037.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-91heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]