PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna24027.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 33816.9 Da PI: 8.6347 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.5 | 7.1e-19 | 15 | 60 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l +v+++G+++W++I++ ++ gR++k+c++rw + mrna24027.1-v1.0-hybrid 15 KGPWSPEEDDALQSLVQKHGPRNWSLISKAIP-GRSGKSCRLRWCNQ 60 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 54 | 3.9e-17 | 69 | 111 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd+ +++a++++G++ W+tIar + gRt++ +k++w++ mrna24027.1-v1.0-hybrid 69 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 111 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.147 | 10 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-32 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-17 | 14 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-18 | 15 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 16 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.32E-16 | 17 | 59 | No hit | No description |
SMART | SM00717 | 2.9E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 20.757 | 67 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.3E-14 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MAMNRKEMDR MDRIKGPWSP EEDDALQSLV QKHGPRNWSL ISKAIPGRSG KSCRLRWCNQ 60 LSPQVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKCSSMS 120 DDGNGNGVGY DGNFHEQPPL KRSVSAGSGV PVSTELFMNP GSPSGSDLSD SSVQVMSPSH 180 VYRPVARSGG VLPPVETTSS SNNNNINLNS DPPTSLSLSL PGVDSCEVSN HRVAAVVEST 240 QNQAAAQPAA YDPMRSFPAE LLELVQGMIK KEVRSYMEGL EQSGFGVMRQ QSDGFRNVAV 300 KRIGISRIE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 7e-41 | 14 | 116 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 7e-41 | 14 | 116 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-41 | 14 | 116 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00476 | DAP | Transfer from AT4G37260 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna24027.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004287994.1 | 0.0 | PREDICTED: transcription factor MYB44-like | ||||
Swissprot | O23160 | 1e-103 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | A0A2P6RNT9 | 0.0 | A0A2P6RNT9_ROSCH; Putative transcription factor MYB-HB-like family | ||||
STRING | XP_004287994.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF843 | 34 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 7e-79 | myb domain protein 73 |
Link Out ? help Back to Top | |
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Phytozome | mrna24027.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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