PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna24027.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family MYB
Protein Properties Length: 310aa    MW: 33816.9 Da    PI: 8.6347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna24027.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.1e-191560147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g+W++eEd+ l  +v+++G+++W++I++ ++ gR++k+c++rw + 
  mrna24027.1-v1.0-hybrid 15 KGPWSPEEDDALQSLVQKHGPRNWSLISKAIP-GRSGKSCRLRWCNQ 60
                             79******************************.***********985 PP

2Myb_DNA-binding543.9e-1769111347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  mrna24027.1-v1.0-hybrid  69 AFTPEEDDTIIRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 111
                              79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.1471065IPR017930Myb domain
SuperFamilySSF466892.7E-3212108IPR009057Homeodomain-like
SMARTSM007176.4E-171463IPR001005SANT/Myb domain
PfamPF002491.1E-181560IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-261668IPR009057Homeodomain-like
CDDcd001675.32E-161759No hitNo description
SMARTSM007172.9E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.75767116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2369115IPR009057Homeodomain-like
PfamPF002491.3E-1469111IPR001005SANT/Myb domain
CDDcd001671.18E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAMNRKEMDR MDRIKGPWSP EEDDALQSLV QKHGPRNWSL ISKAIPGRSG KSCRLRWCNQ  60
LSPQVEHRAF TPEEDDTIIR AHARFGNKWA TIARLLSGRT DNAIKNHWNS TLKRKCSSMS  120
DDGNGNGVGY DGNFHEQPPL KRSVSAGSGV PVSTELFMNP GSPSGSDLSD SSVQVMSPSH  180
VYRPVARSGG VLPPVETTSS SNNNNINLNS DPPTSLSLSL PGVDSCEVSN HRVAAVVEST  240
QNQAAAQPAA YDPMRSFPAE LLELVQGMIK KEVRSYMEGL EQSGFGVMRQ QSDGFRNVAV  300
KRIGISRIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-41141163105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-41141163105C-Myb DNA-Binding Domain
1msf_C7e-41141163105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna24027.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004287994.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-103MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2P6RNT90.0A0A2P6RNT9_ROSCH; Putative transcription factor MYB-HB-like family
STRINGXP_004287994.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.17e-79myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]