PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23963.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 708aa MW: 76991.9 Da PI: 6.2857 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.1 | 2.4e-30 | 344 | 402 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d +++++tYeg+Hnh+ mrna23963.1-v1.0-hybrid 344 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCADDRTILVTTYEGNHNHP 402 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-33 | 328 | 404 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.18E-27 | 336 | 404 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.746 | 338 | 404 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 343 | 403 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-26 | 345 | 402 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 708 aa Download sequence Send to blast |
MAKGGGLSID SDPIAYLSLH KPIVLNSFQD HYPRPTSTTY HHLSSSSMDN PPPPPPPPPQ 60 TLQLSVNLNC TDDRENDTLL SSPPQSDDNQ RKVVDERDFF ADNNNKAAAE EASADKMDFD 120 DGPSGMDFNL NTGLNLLITN TSSDQSVVDD GISSSLEDKR AKSELAVLQA ELERMNSENQ 180 RLRGMLSQVT TNYNALQVHL LSLMQNQKAD NGAEVEEKKV NTGNGSQVVV PRQFMDLGLA 240 ANGDAEEPSQ SSSDERSRER SGSGDDGKTG AGHVGDEGHA FDQVKKEFGR GISGREESPD 300 QQTQSWGPNK VPRLNSPKEV DQAEATMRKA RVSVRARSEA TMITDGCQWR KYGQKMAKGN 360 PCPRAYYRCT MAAGCPVRKQ VQRCADDRTI LVTTYEGNHN HPLPPAAMAM ASTTSSAARM 420 LLSGSMPSAD GLMDSSFLTR TILPCSSSMA TISASAPFPT VTLDLTQSPN PLQFPRPPGQ 480 FNIPFPNPSQ TNGPASLLPQ IFGQALYNQS KFSGLQMSQD MDRNAQPQQA QQGQQQNSLA 540 DTVSAATAAI AADPTFTAAL AAAITSILGN AHPNDIGNNS TNNNTNNNNS NGNNSSKLQQ 600 LLAFFTPSIS LVNQVHTQRM EHLRQYSMEL AQLQVFSART MSQLGILLLR IKILLRQPRS 660 LASHLWQLSL MAYLDLDTKR SQLEVLFPSG IIWSVKVLLK NQYFHSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 330 | 406 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23963.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463437.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-143 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2P6S240 | 0.0 | A0A2P6S240_ROSCH; Putative transcription factor WRKY family | ||||
STRING | XP_004289178.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-110 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna23963.1-v1.0-hybrid |