PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23924.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 452aa    MW: 51807.6 Da    PI: 9.8565
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23924.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF503.7e-16171210342
                              --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                              i n+s r+ tf kR+  ++KK +EL++LCd++++ ii+s+
  mrna23924.1-v1.0-hybrid 171 ITNDSARKATFKKRKMSLMKKVSELCTLCDIDACAIIYSP 210
                              89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-23161220IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.937161209IPR002100Transcription factor, MADS-box
CDDcd002663.23E-31162245No hitNo description
SuperFamilySSF554552.49E-22162255IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-8163183IPR002100Transcription factor, MADS-box
PfamPF003191.1E-16171211IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-8183198IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-8198219IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAAGEQFVTI SMQATMGDEE IEKKKKKKRI RASLKLKLIH LEIVLLIIEN LAVWFLLITR  60
PHHFKFPCAP MTSALIYGAF TTFYTVVRFL VLSWLSPPDD MKPDLSAFHI FLVDRIAFFL  120
AIKYFWTGGW DMIIGVISAM STICSVACVF KNQKSVFAKT MTRKKVKLTY ITNDSARKAT  180
FKKRKMSLMK KVSELCTLCD IDACAIIYSP YDSQPEVWPS LLGAHRVLAQ FKTMPEMEQS  240
KKMVNQESFL RQRINKSQEQ LKKQKKDNRE KEMARVMFQS LTGKSLQELT MSDLTDLNWV  300
IDQHLKEIQL RMKNIKNKAV ESPNHVQGAQ GLPATRENRM PAMKTNSEGS NNNMAMKSGD  360
EGSIMQHATL DMQAFDQMRH NMEAMQPQMM QMVTQKPQNS WLMDMMDAPA PPPHQDHHQH  420
MGFREEMMFP FADHDNSTMW PNPPAGGNNL P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KKKKKKR
2162184RKKVKLTYITNDSARKATFKKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23924.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463188.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2P6S9391e-145A0A2P6S939_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004289160.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-57AGAMOUS-like 80