PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna23884.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bHLH

Protein Properties

Length: 392aa MW: 43007.9 Da PI: 9.9456

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna23884.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.1	1e-05	235	275	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+ + ++ L++llP+ K++ a++Le A +Y++ Lq mrna23884.1-v1.0-hybrid 235 RERRQTLSDKTRCLQKLLPWE-----NKMDTAAMLETAHRYVRFLQ 275 99****************7.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.614	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-7	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-9	233	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.17E-5	233	279	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.5E-8	235	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MKLVKDLSWE VTWKEHQVTE TPSKARSQIL LLGDDADRSL DLVVLTSKAK TARPRREQPK 60 FCYRTGQNLQ QGRAVTLADK ERQTSQSKPD GLSPLRLKTP KTKMEKAEKE SMMSLLVSGT 120 TTSPAEEEDS PTNLHSILAA NTTTQPSLPL SLFADTYRSL ATPKTEPPLY QYGAVSSPND 180 YSIFNHLPDL LTLDNSPYKR TRLLDSSHQT LAASSHYQLY PSPPVVAPRG SRLARERRQT 240 LSDKTRCLQK LLPWENKMDT AAMLETAHRY VRFLQAQVAA LHAMPIVASD CSPPVLTRGR 300 GGGGGDVEVM SRLSRSQMLQ VIVNSPVAQM RMAEQGRCVF SVEQLALLNK KSVIRSAMVS 360 AASSAASGSG HYYHPSATSF FDSSASASTT N*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MKLVKDLSWE VTWKEHQVTE TPSKARSQIL LLGDDADRSL DLVVLTSKAK TARPRREQPK  60
FCYRTGQNLQ QGRAVTLADK ERQTSQSKPD GLSPLRLKTP KTKMEKAEKE SMMSLLVSGT  120
TTSPAEEEDS PTNLHSILAA NTTTQPSLPL SLFADTYRSL ATPKTEPPLY QYGAVSSPND  180
YSIFNHLPDL LTLDNSPYKR TRLLDSSHQT LAASSHYQLY PSPPVVAPRG SRLARERRQT  240
LSDKTRCLQK LLPWENKMDT AAMLETAHRY VRFLQAQVAA LHAMPIVASD CSPPVLTRGR  300
GGGGGDVEVM SRLSRSQMLQ VIVNSPVAQM RMAEQGRCVF SVEQLALLNK KSVIRSAMVS  360
AASSAASGSG HYYHPSATSF FDSSASASTT N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna23884.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011463010.1	0.0	PREDICTED: uncharacterized protein LOC105351134
TrEMBL	A0A2P6S2I0	1e-123	A0A2P6S2I0_ROSCH; Putative transcription factor bHLH family
STRING	EMJ17941	1e-40	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13426	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	5e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	mrna23884.1-v1.0-hybrid