PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23862.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | WRKY | ||||||||
Protein Properties | Length: 277aa MW: 31476.7 Da PI: 8.2076 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.4 | 4.5e-31 | 205 | 262 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYe eHnh+ mrna23862.1-v1.0-hybrid 205 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEAEHNHS 262 99************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08387 | 7.1E-5 | 131 | 164 | IPR006566 | FBD domain |
Pfam | PF10533 | 4.4E-7 | 182 | 201 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-32 | 191 | 262 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.595 | 198 | 264 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-26 | 200 | 262 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-37 | 203 | 263 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 205 | 261 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 277 aa Download sequence Send to blast |
MKLTVFEYHS FCKLERNVFL NAPRMSDLYF HRLAENKIPA LLSQSNAAQV EILTCGLFSE 60 KILVMPRSTI QFWNLKQLEL TVEIIDDLEE GLDVLLVFSF LKASPLLQSS NLGVCHLLLS 120 SLQRQVKVKE LKEVEILGCE GNWCKIELAI YVMQRAQCLD KLVFNPSASH YPADGEWLKS 180 FQKLRLKRVV RVPAISLKMA DIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH 240 VERALDDPSM LVVTYEAEHN HSLNIAEASN LILESS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-22 | 191 | 263 | 2 | 73 | WRKY transcription factor 1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23862.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463837.1 | 1e-130 | PREDICTED: uncharacterized protein LOC105351416 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 5e-51 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | mrna23862.1-v1.0-hybrid |