PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23830.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 251aa    MW: 27603.6 Da    PI: 10.4135
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23830.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08171211954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  mrna23830.1-v1.0-hybrid 171 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 211
                              699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-13163220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14166220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6172211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-6185216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDIDMLKSSS AGHDLHHPHH HMDMMTVMMQ QQSPEFYHNT PPPTFSEIDF TWGSSISPNN  60
IGTVVPQPMF HNPTSPSQSQ PTFPNPSSSS VSFLSGGHPV QSNPIKHAAA AAGAVSIPSS  120
NSYEKRNSMA AMREMIFRIA AMQPIQIDPE AVKPPKRRNV KISKDPQSVA ARHRRERISE  180
RIRILQRLVP GGTKMDTASM LDEAIHYVKF LKKQVQTLER AGADRPVGVG FMGPQLGIAN  240
YSAGSMQMLR *
Functional Description ? help Back to Top
Source Description
UniProtRequired for the female reproductive tract development and fertility. {ECO:0000269|PubMed:17855426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23830.1-v1.0-hybrid
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269|PubMed:17855426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004288031.10.0PREDICTED: transcription factor HEC2-like
SwissprotQ9SND45e-46HEC2_ARATH; Transcription factor HEC2
TrEMBLA0A2P6RNI81e-126A0A2P6RNI8_ROSCH; Putative transcription factor bHLH family
STRINGXP_004288031.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.18e-42bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhu L, et al.
    A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis.
    Plant Cell, 2016. 28(4): p. 855-74
    [PMID:27073231]