PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23819.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 949aa MW: 104449 Da PI: 5.9208 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48 | 2.3e-15 | 150 | 196 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq mrna23819.1-v1.0-hybrid 150 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 196 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-19 | 143 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.28E-20 | 143 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.86 | 146 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.87E-17 | 149 | 200 | No hit | No description |
Pfam | PF00010 | 7.9E-13 | 150 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 152 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.20.140.10 | 2.4E-151 | 403 | 620 | No hit | No description |
SuperFamily | SSF54675 | 8.39E-43 | 406 | 543 | No hit | No description |
TIGRFAMs | TIGR01513 | 4.2E-149 | 411 | 920 | IPR006405 | Nicotinate phosphoribosyltransferase pncB-type |
CDD | cd01570 | 0 | 411 | 796 | No hit | No description |
SuperFamily | SSF51690 | 2.94E-100 | 544 | 615 | IPR002638 | Quinolinate phosphoribosyl transferase, C-terminal |
Gene3D | G3DSA:3.20.140.10 | 2.4E-151 | 661 | 845 | No hit | No description |
SuperFamily | SSF51690 | 2.94E-100 | 664 | 944 | IPR002638 | Quinolinate phosphoribosyl transferase, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009435 | Biological Process | NAD biosynthetic process | ||||
GO:0019358 | Biological Process | nicotinate nucleotide salvage | ||||
GO:0004514 | Molecular Function | nicotinate-nucleotide diphosphorylase (carboxylating) activity | ||||
GO:0004516 | Molecular Function | nicotinate phosphoribosyltransferase activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 949 aa Download sequence Send to blast |
MGMGDTFEYN YQNNNSCSSS APASSVSVAQ SHSSTDEISL FLQQILVRSS SLSGQQFLFS 60 SSPAGYALPE NLGRPSNDSF VGGGIRGVDG SMAVVTASGP NVSSSSVGAS ENEADEYDCE 120 SEEGLEALVD EAAVKSGGRS SSKRSRAAEV HNLSEKRRRS RINEKMKALQ NLIPNSNKTD 180 KASMLDEAIE YLKQLQLQVQ MLSMRNGMSL HPMCLPGASQ FSQIRMDFGG EENRPVHLNM 240 SGILNMNQDT STQNLYNPNQ SYVPDLSNVV NSEDAFGLEA SIQAHLGPFQ LPNSSKGICR 300 DELLQHQPVS VNHSETNPLE FELGAMATVS LPYNAQVSDQ KGNGSLETSI IGRDRKESKP 360 LKLIEQHHLD RARERERAAA KQKSNLASLT AMAAKSNGQA LAGPTNPMVT PLLTDLYQFT 420 MAYAYWKAGK HNERAVFDLY FRKNPFGGEY TVFAGLEECI KFIANFKLAE DEIDFVRQSL 480 SSSCEEGFFD YLRGVDCADV EVYAIQEGSV VFPKVPLVRV EGPIAVVQLL ETPFLNLINY 540 ASLVSTNAAR HRFVAGESKM LLEFGLRRAQ GPDGGIAASR YCYMGGFHAT SNVAAGKIFG 600 IPLRGTHSHA FVSSFMSPDE IIDKTLHSSD KSSTCEDFVS LVQTWLSKIQ WSKSLNGTFG 660 ETNQSELAAF TSYALAFPDN FLALVDTYDV MRSGIPNFCA VALALNDLGY KAAGIRLDSG 720 DLAYLSSEAR KIFNIIEKEF GVPGFGKTLI TASNDLNEET LDALNKQGHE VDAFGIGTHV 780 VTCYAQAALG CVFKLVEINN QPRIKLSEDV TKVSIPCKKR SYRLFGKEGY PLVDIMTGEN 840 EPPPKVGERI LCRHPFNESK RAYVVPQRVE ELMKCFWHGP DGVREDLPPL KDIRERCISQ 900 LKKMRPDHMR RLNPTPYKFN TEQVSVSAKL YDFIHFLWLN EAPVGELQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yub_A | 1e-155 | 392 | 943 | 1 | 538 | Nicotinate phosphoribosyltransferase |
4yub_B | 1e-155 | 392 | 943 | 1 | 538 | Nicotinate phosphoribosyltransferase |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Helps prevent cellular oxidative stress via its role in NAD biosynthesis. {ECO:0000250|UniProtKB:Q6XQN6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23819.1-v1.0-hybrid |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the quinolinate synthase mutant old5 causing increased NAD steady state levels. {ECO:0000269|PubMed:18978034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY679615 | 0.0 | AY679615.1 Fragaria x ananassa basic helix-loop-helix protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004288024.1 | 0.0 | PREDICTED: nicotinate phosphoribosyltransferase | ||||
Swissprot | Q84WV8 | 0.0 | NPRT2_ARATH; Nicotinate phosphoribosyltransferase 2 | ||||
TrEMBL | A0A498KI72 | 0.0 | A0A498KI72_MALDO; Uncharacterized protein | ||||
STRING | XP_004288024.1 | 0.0 | (Fragaria vesca) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 4e-56 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna23819.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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