PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23802.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family HSF
Protein Properties Length: 498aa    MW: 55722 Da    PI: 4.8746
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23802.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34141052102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              Fl+k+ye+++d+++++++sws+  +sf+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F 
  mrna23802.1-v1.0-hybrid  14 FLSKTYEMVDDSSTDSIVSWSAGDKSFIVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFV 90 
                              9********************999****************************************9998.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+ +l+++i+r+k 
  mrna23802.1-v1.0-hybrid  91 RGQPQLMKSIHRRKP 105
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.2E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.48E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.8E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDEVQGITGS LPPFLSKTYE MVDDSSTDSI VSWSAGDKSF IVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFV RGQPQLMKSI HRRKPVHSHS LPNLQVQEQG  120
SSSLSEAERK SMKDEIERLN HEKECLAVEL QRHEQERQGM ELQMQFLKDR LQHMQEQQQS  180
MVAFVARVLQ RPELASNPVP QFELRDRKRR FSSVDWAYDN VSIGNGQMGS WQNVTRENME  240
MGKVLELESF LTFWEDTIRE VGQTQLHAST NLELAESTSC GESPAVSCMQ RSVGHQYKLP  300
AIDMNSEPAA AVSPVLAESV SPVPAGSVSA EPARSVSPEP ARSVSPEPAR SVSLEPARSV  360
SLEPAISVSL EPARSVSLEP ARSVSLEPAR SVSLEPARSV SFEPARSVSF ELDASKQTSK  420
EQTAKLSGAG VNDMFWEQFL TENPGSTDSQ EVQLERKDSD GRGNEFSASE HGKSWWSMRN  480
VNNLTEQMGH LSSVENT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231010325129Heat shock factor protein 1
5d5v_B2e-231010325129Heat shock factor protein 1
5d5v_D2e-231010325129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23802.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309634.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494032e-93HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A1B0V8E60.0A0A1B0V8E6_FRAVE; Heat shock factor A4a
STRINGXP_004309634.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.18e-96heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]