PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23716.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 622aa MW: 70234.7 Da PI: 4.9027 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.5 | 5e-13 | 353 | 396 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ eLr+l+P+ + Kl+ a+iL A+eY+ +Lq mrna23716.1-v1.0-hybrid 353 VAERKRRKKLNDRLYELRSLVPNiS------KLDRASILGDAIEYVMELQ 396 68*********************66......****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 7.7E-21 | 5 | 157 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.68E-13 | 339 | 398 | No hit | No description |
PROSITE profile | PS50888 | 16.247 | 346 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.77E-17 | 349 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-16 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.7E-16 | 353 | 408 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.1E-11 | 353 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00264 | 506 | 569 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000978 | Molecular Function | RNA polymerase II core promoter proximal region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MSNLIQRLRP LVGLKGWDFC VVWKLSEDQR FVEWMDCCCS GTEMSTQDGG YEDHLLFPVV 60 SAVLPCRDTL LQHPRTTSCD LLSKMSSSVP LDSGIYAETL MSNQPSWLNF SNSTFSSTSA 120 EEETVGTRVL MPIPGGLVEL LVAKQVLEDQ HVIDFITEQY NFSVEQNHIG PSFGVNLDIH 180 DGIQSKQVIL DHEQMDPSNR IICSSDNSAM NFLQQFTHNL GNRMKNSSYN VNSFEDPSHE 240 QFLSDKQMDH SLHNCSAKTV FDQAMEAMQQ SIMMSETQAT HHMHMQFMDQ SLEPDMDHEQ 300 DAGNNDKNSN IINDDGEQAT DLNSDCSDHD QFDAEDDAKY RRRTGKGQAK NLVAERKRRK 360 KLNDRLYELR SLVPNISKLD RASILGDAIE YVMELQNQAK KLQDELDDDH DHEEDRHVHE 420 GAANKQCGIT FQHNSIQSEI DQSQSGVDLK AEQNDHQAPN GFHLGTAGDG SVSKQSPDSE 480 VIHDHKTQQM EPQVEVAQID GNQFFVKVFC EHKPGGFVRL MEALSSLSLE VTNANVTSFR 540 CLVSNVFIVE RKDSGLVEAD EVRDSLLELT KNPSKWRSDE MVKASEIGIG LDNNHHHHPH 600 HQNLHNHHFS PYHLHHLPTE A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 340 | 360 | RRRTGKGQAKNLVAERKRRKK |
2 | 354 | 361 | ERKRRKKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23716.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011458683.1 | 0.0 | PREDICTED: transcription factor ABORTED MICROSPORES-like | ||||
TrEMBL | A0A2P6PSR3 | 0.0 | A0A2P6PSR3_ROSCH; Putative transcription factor bHLH family | ||||
STRING | XP_004292632.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4225 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16910.1 | 1e-128 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna23716.1-v1.0-hybrid |