PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23716.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 622aa    MW: 70234.7 Da    PI: 4.9027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23716.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13353396755
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +Er+RR+++N+++ eLr+l+P+ +      Kl+ a+iL  A+eY+ +Lq
  mrna23716.1-v1.0-hybrid 353 VAERKRRKKLNDRLYELRSLVPNiS------KLDRASILGDAIEYVMELQ 396
                              68*********************66......****************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-215157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.68E-13339398No hitNo description
PROSITE profilePS5088816.247346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-17349407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-16352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16353408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11353396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00264506569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MSNLIQRLRP LVGLKGWDFC VVWKLSEDQR FVEWMDCCCS GTEMSTQDGG YEDHLLFPVV  60
SAVLPCRDTL LQHPRTTSCD LLSKMSSSVP LDSGIYAETL MSNQPSWLNF SNSTFSSTSA  120
EEETVGTRVL MPIPGGLVEL LVAKQVLEDQ HVIDFITEQY NFSVEQNHIG PSFGVNLDIH  180
DGIQSKQVIL DHEQMDPSNR IICSSDNSAM NFLQQFTHNL GNRMKNSSYN VNSFEDPSHE  240
QFLSDKQMDH SLHNCSAKTV FDQAMEAMQQ SIMMSETQAT HHMHMQFMDQ SLEPDMDHEQ  300
DAGNNDKNSN IINDDGEQAT DLNSDCSDHD QFDAEDDAKY RRRTGKGQAK NLVAERKRRK  360
KLNDRLYELR SLVPNISKLD RASILGDAIE YVMELQNQAK KLQDELDDDH DHEEDRHVHE  420
GAANKQCGIT FQHNSIQSEI DQSQSGVDLK AEQNDHQAPN GFHLGTAGDG SVSKQSPDSE  480
VIHDHKTQQM EPQVEVAQID GNQFFVKVFC EHKPGGFVRL MEALSSLSLE VTNANVTSFR  540
CLVSNVFIVE RKDSGLVEAD EVRDSLLELT KNPSKWRSDE MVKASEIGIG LDNNHHHHPH  600
HQNLHNHHFS PYHLHHLPTE A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340360RRRTGKGQAKNLVAERKRRKK
2354361ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23716.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458683.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
TrEMBLA0A2P6PSR30.0A0A2P6PSR3_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292632.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-128bHLH family protein