PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23715.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 584aa    MW: 66027.7 Da    PI: 5.1077
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23715.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.6e-14337380755
                              HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               +Er+RR+++N+++ +Lr+l+P+ +      K++Ka+iL+ A++Y+k+Lq
  mrna23715.1-v1.0-hybrid 337 VAERKRRKKLNEKLYKLRSLVPNiS------KMDKASILKDAIDYVKDLQ 380
                              68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-1743190IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.65E-16329384No hitNo description
PROSITE profilePS5088817.498330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-19332392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11337380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17337389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00114467529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MDSLFSSRIS LVLELIPCVT GILQLVMYIA GVMNMTMYNL IIERLRPLVG LKGWDYCVLW  60
KLSEDQRFIE WIGCCCSGID EDSQNGGQEL LFPVYQVFRC RDTMQHSRTS SCDILASLPS  120
SMPLDSGIYA KTIMSNQPCW LNCSSSNSDS SAMLERDGTR VLVPTAGGLM IELFVSKDVF  180
EDQHVIDFIT AQCNIWREQD TLISASNTCS TNTPVLSPSM ASLDPHDVNL PYDITVDRIH  240
LCSSESSSPL NFLQHVTSYN SENRMKNSPS ACTYNQGNSH EYSLDQPLEN MEQQGTLDDQ  300
DSIKQADHSA SDCSDQTDEN TNYKRRNGKE PQSKNLVAER KRRKKLNEKL YKLRSLVPNI  360
SKMDKASILK DAIDYVKDLQ RQVKELQDVL EDNSNGGGAK RTFNSISGNY NNYQSENQHG  420
ISMANKTESD KPQNGFHDSD HNTNEMGQQQ MEPQVGVTQL DGNEFFVTVF CEQKPEGFVR  480
LMEALDSLGL EVTNANVTSF RSLVSNVFKV EKRDSEILQA DEVRDSLLEI TRNPSKGYWP  540
EMAKAKASGN DRSLDYDHDN KHHYHHHLHN YHNSTCHLQH LYD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323344KRRNGKEPQSKNLVAERKRRKK
2338345ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23715.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011458681.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
TrEMBLA0A2P6PSS10.0A0A2P6PSS1_ROSCH; Putative transcription factor bHLH family
STRINGXP_004292631.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-118bHLH family protein