PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23639.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 216aa MW: 25105.2 Da PI: 9.0771 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.3 | 7.9e-11 | 78 | 179 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek.dg 74 fY +Y+ GFs+rk k ++ +++ +++t + +k+ ++++ k + ++r+r +r +C a+++vk ++ ++ mrna23639.1-v1.0-hybrid 78 FYLHYSVAKGFSIRKYKLAWNSLEDRLIHKTKKENKQKVLHRSDVKdsekscrgkkmvKLVSSRSRRLSRQKCLAQFTVKYDRkKE 163 9****************9999888888888888888776665555557788888888777778899***************99899 PP FAR1 75 kwevtkleleHnHela 90 ++ +++++eHnH+l+ mrna23639.1-v1.0-hybrid 164 GYYASSFRTEHNHPLT 179 9*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-8 | 78 | 179 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MEGIDLSTTQ TENSDGSDEA KTRDSFGNGS DDRMEVSESE DRSDDEQCTM FNGKPYKDIE 60 LDDLSNVVFK SVEEAEMFYL HYSVAKGFSI RKYKLAWNSL EDRLIHKTKK ENKQKVLHRS 120 DVKDSEKSCR GKKMVKLVSS RSRRLSRQKC LAQFTVKYDR KKEGYYASSF RTEHNHPLTR 180 LVHRQFMRTN RLVKEHDIAQ HRGLGNFLGV LCYNE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23639.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306895.1 | 1e-128 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like | ||||
STRING | XP_004306895.1 | 1e-128 | (Fragaria vesca) |
Link Out ? help Back to Top | |
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Phytozome | mrna23639.1-v1.0-hybrid |