PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna23617.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

Trihelix

Protein Properties

Length: 434aa MW: 48965 Da PI: 6.5402

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna23617.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.6	4.5e-30	115	200	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+ql mrna23617.1-v1.0-hybrid 115 RWPRQETLTLLEIRSSLDSKFKETNQKGPLWDEVSRIMsEEHGYQRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQL 198 8***********************************999*************************98..55667***** PP trihelix 86 ea 87 ea mrna23617.1-v1.0-hybrid 199 EA 200 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	108	173	IPR017877	Myb-like domain
CDD	cd12203	2.56E-23	114	180	No hit	No description
Pfam	PF13837	6.0E-21	114	201	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MDDYPDLRQL MASRTQQFVQ FPDPFSVRPF NNYNPNSSVA VGQEVNTRGL FEFGSAASAP 60 PSFSTIISNT SVAANLNGST AGSSVGSLYG GLELMNHQHG WSINGNDGSA GNNSRWPRQE 120 TLTLLEIRSS LDSKFKETNQ KGPLWDEVSR IMSEEHGYQR SGKKCKEKFE NLYKYYKKTK 180 EGKAGRQDGK HYRFFRQLEA IYGDRSTNPL CSTSDQTNLT GTLNPSLLYN HTTAAINNQE 240 YQEVKLGAES LSFSNNSTDM ETSTSENNGD DLSNSANENQ RCSRGVKKTW KAHVEEFVNS 300 QMMKVMKAQE GWMEKMLKTI EGREEERFSK EEEWRKREEE RFKQQVDEFW AKERAWVETR 360 DASIMEAVGK IRGMGTNSYN NKAKDENTGG QQLMGGGLVP SSSNYMNMES SSLYIPTNEA 420 ENLWNRYGGK LSK*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MDDYPDLRQL MASRTQQFVQ FPDPFSVRPF NNYNPNSSVA VGQEVNTRGL FEFGSAASAP  60
PSFSTIISNT SVAANLNGST AGSSVGSLYG GLELMNHQHG WSINGNDGSA GNNSRWPRQE  120
TLTLLEIRSS LDSKFKETNQ KGPLWDEVSR IMSEEHGYQR SGKKCKEKFE NLYKYYKKTK  180
EGKAGRQDGK HYRFFRQLEA IYGDRSTNPL CSTSDQTNLT GTLNPSLLYN HTTAAINNQE  240
YQEVKLGAES LSFSNNSTDM ETSTSENNGD DLSNSANENQ RCSRGVKKTW KAHVEEFVNS  300
QMMKVMKAQE GWMEKMLKTI EGREEERFSK EEEWRKREEE RFKQQVDEFW AKERAWVETR  360
DASIMEAVGK IRGMGTNSYN NKAKDENTGG QQLMGGGLVP SSSNYMNMES SSLYIPTNEA  420
ENLWNRYGGK LSK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna23617.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004308550.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	5e-82	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A2P6SC08	0.0	A0A2P6SC08_ROSCH; Putative transcription factor MYB family
STRING	XP_004308550.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2022	34	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	4e-72	Trihelix family protein

Link Out ? help Back to Top
Phytozome	mrna23617.1-v1.0-hybrid

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]