PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna23545.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

FAR1

Protein Properties

Length: 930aa MW: 105265 Da PI: 6.7178

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna23545.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47	8.4e-15	63	137	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 Y+eYA+++GF+ ++ +s++s+ +g++t r+fvC keg ++++ ++ C+a+l+++ + ++w+ tk+++eH+H mrna23545.1-v1.0-hybrid 63 LYEEYARRLGFNSKVGQSSRSNPDGTTTAREFVCGKEGVKRRHGDS--------------CDAMLRIESRGGNRWVSTKFVKEHSH 134 7*************************************998877..............************************ PP FAR1 88 ela 90 +la mrna23545.1-v1.0-hybrid 135 ALA 137 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-11	63	137	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.1E-31	274	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.029	552	588	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.5E-9	554	586	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-7	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MDVQVIDVRA VGHSGMGDDG DAERSEGGEV NNGETPQAHV EEGEIPEPYV GMEFHSEEAA 60 KNLYEEYARR LGFNSKVGQS SRSNPDGTTT AREFVCGKEG VKRRHGDSCD AMLRIESRGG 120 NRWVSTKFVK EHSHALANPS PVHYLRPRRH FAGAAKNLAE AYQGVGIVPS GVMYVSMDGN 180 RASLEKNRLV RSASSAESNR QVKNAAPVNP IRPCSRRRTL GKDAQNLLEY FKKMQAENPG 240 FFYAIQLDED NHMGNVFWSD ARSRAAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ 300 TILFGCALLL DESEASFNWL FKTFLTAMND RRPVSITTDQ DRAIQTAVSQ VFPEVRHCIS 360 KWHVLREGQE RLAHVCHAHP NFQVELYNCI NLTETIEEFE LSWDCILDKY DLRRNDWLQS 420 LYSARAQWVP VYFRDSFFAA IAPNQGFEVS FFEGYVNQQT TLPLFFRQYE RALENWFERE 480 VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF 540 RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYSGILCRHV LTVFTVTNVL TLPSHYILKR 600 WTRNAKNGTG LDERSGELHD QESLTLRYNH LCREAIRYAE DGATTIETYN AAMTALRDGG 660 KKVSVVKRNV AKVTPPSSQV TGTGYEDKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP 720 GQSVSDLNLP RMAPVSLLRD DGTPENMVVL PQLKSMTWVM ENKNSAPGNR VAVINLKLHD 780 YSRIPSVESE VKFQLSRVSL EPMLRSMAYI SEQLSTPANK VAVINLKLQD TDTSTGESEV 840 KFQVSRDTLG AMLRSMAYIR EQLSTSDFFL EENRKALYCL DFILVLLDLM YHPFLSMDKI 900 GSLCFIARLQ VCLMQRTLGV MPKASRVDA*

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MDVQVIDVRA VGHSGMGDDG DAERSEGGEV NNGETPQAHV EEGEIPEPYV GMEFHSEEAA  60
KNLYEEYARR LGFNSKVGQS SRSNPDGTTT AREFVCGKEG VKRRHGDSCD AMLRIESRGG  120
NRWVSTKFVK EHSHALANPS PVHYLRPRRH FAGAAKNLAE AYQGVGIVPS GVMYVSMDGN  180
RASLEKNRLV RSASSAESNR QVKNAAPVNP IRPCSRRRTL GKDAQNLLEY FKKMQAENPG  240
FFYAIQLDED NHMGNVFWSD ARSRAAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ  300
TILFGCALLL DESEASFNWL FKTFLTAMND RRPVSITTDQ DRAIQTAVSQ VFPEVRHCIS  360
KWHVLREGQE RLAHVCHAHP NFQVELYNCI NLTETIEEFE LSWDCILDKY DLRRNDWLQS  420
LYSARAQWVP VYFRDSFFAA IAPNQGFEVS FFEGYVNQQT TLPLFFRQYE RALENWFERE  480
VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKNGTG LDERSGELHD QESLTLRYNH LCREAIRYAE DGATTIETYN AAMTALRDGG  660
KKVSVVKRNV AKVTPPSSQV TGTGYEDKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP  720
GQSVSDLNLP RMAPVSLLRD DGTPENMVVL PQLKSMTWVM ENKNSAPGNR VAVINLKLHD  780
YSRIPSVESE VKFQLSRVSL EPMLRSMAYI SEQLSTPANK VAVINLKLQD TDTSTGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSTSDFFL EENRKALYCL DFILVLLDLM YHPFLSMDKI  900
GSLCFIARLQ VCLMQRTLGV MPKASRVDA*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna23545.1-v1.0-hybrid

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011469265.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A2P6SCJ0	0.0	A0A2P6SCJ0_ROSCH; Putative transcription factor FAR family
STRING	XP_004307013.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	mrna23545.1-v1.0-hybrid

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]