PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23544.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 24793.6 Da PI: 6.0437 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.9 | 6.4e-10 | 14 | 60 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 rWT Ed+l+ +a + + +W++Ia++++ g+t++++ +++ ++ mrna23544.1-v1.0-hybrid 14 RWTRAEDKLFEQALVSFSEDlpdRWERIAEMVP-GKTAEEVLEHYETL 60 9*****************99*************.**********9875 PP | |||||||
2 | Myb_DNA-binding | 43.5 | 7.3e-14 | 119 | 164 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+ E++l++ + kq+G+g+W++I+r + +Rt+ q+ s+ qky mrna23544.1-v1.0-hybrid 119 KPWTEIEHKLFLVGLKQFGKGDWRSISRNVVVTRTPTQVASHAQKY 164 58*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.767 | 10 | 65 | IPR017884 | SANT domain |
SMART | SM00717 | 2.6E-9 | 11 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-8 | 14 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-6 | 14 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-8 | 14 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.38E-12 | 14 | 69 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.12 | 113 | 169 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-15 | 115 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-16 | 116 | 168 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.4E-11 | 117 | 167 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-9 | 117 | 163 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-11 | 119 | 164 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-8 | 120 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MFQEAPPCWS SSARWTRAED KLFEQALVSF SEDLPDRWER IAEMVPGKTA EEVLEHYETL 60 VHDVVEIDSG RVELPSYADD SAAAGVGWDS ASQISFDGCK ANNTNNNAAS EAAERKKGKP 120 WTEIEHKLFL VGLKQFGKGD WRSISRNVVV TRTPTQVASH AQKYFLRQSS GKKERKRSSI 180 HDITSVDTNS VPAPAERKWI PSPPPPPGDQ GGSFGFQDFG FPK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-15 | 15 | 77 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23544.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011469263.1 | 1e-165 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-63 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2P6SCI3 | 1e-130 | A0A2P6SCI3_ROSCH; Putative transcription factor MYB/SANT family | ||||
STRING | XP_004307012.1 | 1e-154 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6068 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-73 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna23544.1-v1.0-hybrid |
Publications ? help Back to Top | |||
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