PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna23487.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

bZIP

Protein Properties

Length: 446aa MW: 48838.1 Da PI: 6.5499

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna23487.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.9e-10	230	288	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ mrna23487.1-v1.0-hybrid 230 KRAKRIWANRQSAARSKERKMRYIAELEQKVQTLQTEATSLSAQLTLLQRDTNGLTNEN 288 9*********************************************9999888888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-16	226	290	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.967	228	291	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.82E-11	230	281	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.7E-11	230	285	No hit	No description
Pfam	PF00170	8.2E-9	230	287	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.03E-24	231	280	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MDKDKSPAHG GGLPPPSGRY SSLLPTGTTY NAKSEPSSSS SFPPLASGAT AEPGHFGHGM 60 SSESNHFSHD ISRMPDYPPR KLGHRRAHSE IVTLPDDISF DSDLGVVGGA DGPSFSDETE 120 EDLLSMYLDM DKFNSSSATS SSFQVGEPSA SAPQAAPAFA PATRALTTDN ISICTHERPR 180 VRHQHSQSMD GSTTIKPEML VASSEEMSAV DSKKALSATK LAELALVDPK RAKRIWANRQ 240 SAARSKERKM RYIAELEQKV QTLQTEATSL SAQLTLLQRD TNGLTNENSE LKLRLQTMEQ 300 QVHLQDALND ALKEEIQHLK VLTGQAMPNG GPMMNFASFG AGAAPAPGQQ FYPNNQAMHT 360 LLTAQQFQQL QIHSQKQQHQ FQQHQLHQLQ QQHMQQQQQQ LHHQQQQQQQ QQQELSGDMQ 420 IGATMHSPSQ KDNAPEVNQA VAKDC*

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MDKDKSPAHG GGLPPPSGRY SSLLPTGTTY NAKSEPSSSS SFPPLASGAT AEPGHFGHGM  60
SSESNHFSHD ISRMPDYPPR KLGHRRAHSE IVTLPDDISF DSDLGVVGGA DGPSFSDETE  120
EDLLSMYLDM DKFNSSSATS SSFQVGEPSA SAPQAAPAFA PATRALTTDN ISICTHERPR  180
VRHQHSQSMD GSTTIKPEML VASSEEMSAV DSKKALSATK LAELALVDPK RAKRIWANRQ  240
SAARSKERKM RYIAELEQKV QTLQTEATSL SAQLTLLQRD TNGLTNENSE LKLRLQTMEQ  300
QVHLQDALND ALKEEIQHLK VLTGQAMPNG GPMMNFASFG AGAAPAPGQQ FYPNNQAMHT  360
LLTAQQFQQL QIHSQKQQHQ FQQHQLHQLQ QQHMQQQQQQ LHHQQQQQQQ QQQELSGDMQ  420
IGATMHSPSQ KDNAPEVNQA VAKDC*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna23487.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004309615.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-156	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A2P6S1R1	0.0	A0A2P6S1R1_ROSCH; Putative transcription factor bZIP family
STRING	XP_004309615.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-140	bZIP family protein

Link Out ? help Back to Top
Phytozome	mrna23487.1-v1.0-hybrid

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]