PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23423.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 386aa    MW: 42289.8 Da    PI: 7.4496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23423.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094167189123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              y+C+ C+++F++   L  H  +H
  mrna23423.1-v1.0-hybrid 167 YECKTCNRTFPSFQALGGHRASH 189
                              99**********99999998887 PP
2zf-C2H212.90.00034253275123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++Cg  F++   L  H+r+H
  mrna23423.1-v1.0-hybrid 253 HECSICGAEFTSGQALGGHMRRH 275
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.7E-13166191IPR007087Zinc finger, C2H2
SuperFamilySSF576679.14E-9166189No hitNo description
PROSITE profilePS5015710.637167194IPR007087Zinc finger, C2H2
SMARTSM003550.052167189IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SuperFamilySSF576679.14E-9248275No hitNo description
PfamPF139125.9E-13252277IPR007087Zinc finger, C2H2
SMARTSM003550.01253275IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723253275IPR007087Zinc finger, C2H2
PROSITE patternPS000280255275IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEEAADHQHD HHHHDHQEEE VIIGCKEEQH NTTTTTTTTN NNIIIKGKRT KRLRPQSPIP  60
FAIPTNSSTA EGGGGVGGGE CNNNTINSSP TTSSAEDSTE EEEDMANCLI LLAQGHSRAP  120
SSSPKLQQPH HNATTTTTSR RFMEATPLAA AVGPSKVVAA AGGYYVYECK TCNRTFPSFQ  180
ALGGHRASHK KPKAAINVDD KKHFGIGLQL PSDEEDTRLF KNMNNTSSSS SLSLHLSNRG  240
LVLSSTNNKS KVHECSICGA EFTSGQALGG HMRRHRAPVG GPAANTTLAL TAAPPTTVPL  300
ALEAPQPQQH QQYHHHHQQQ QPLKKQRSML SLDLDLNLPA PEDDHHHRDQ SKFVFTPKQQ  360
QQQQPQQPQQ QQQQERLRIL VDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23423.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469606.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2P6SJ431e-171A0A2P6SJ43_ROSCH; Putative transcription factor C2H2 family
STRINGXP_008233248.11e-117(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-61C2H2 family protein