PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23394.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 1096aa MW: 123864 Da PI: 6.5165 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 137.2 | 1.1e-42 | 514 | 640 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+GfrFhPt+eel+++yLkkk++g++++ vi+e+di+++ePwdLp ++++++++ew++Fs+ d k+ +g+ +nrat++g+Wk mrna23394.1-v1.0-hybrid 514 LPVGFRFHPTEEELIDHYLKKKIKGHDFND--VIPEIDICSYEPWDLPgfSSIRSDDEEWFYFSRPDYKT-KGNSRNRATERGFWK 596 79***********************99655..9***************6448889999*******99986.79999********** PP NAM 85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127 tg ++e++++ +++l+g k+tL+fy+g+ ++g+kt Wv+hey mrna23394.1-v1.0-hybrid 597 ITGVEREIKARrSKALIGKKRTLTFYTGKVRSGQKTGWVIHEYY 640 *********9856667***************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF56219 | 1.2E-27 | 34 | 250 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Gene3D | G3DSA:3.60.10.10 | 1.1E-8 | 41 | 233 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Pfam | PF03372 | 3.2E-13 | 41 | 288 | IPR005135 | Endonuclease/exonuclease/phosphatase |
Gene3D | G3DSA:1.10.238.10 | 7.3E-4 | 238 | 247 | IPR011992 | EF-hand domain pair |
PROSITE profile | PS50222 | 9.409 | 337 | 372 | IPR002048 | EF-hand domain |
Gene3D | G3DSA:1.10.238.10 | 7.3E-4 | 339 | 365 | IPR011992 | EF-hand domain pair |
PROSITE pattern | PS00018 | 0 | 350 | 362 | IPR018247 | EF-Hand 1, calcium-binding site |
SuperFamily | SSF101941 | 4.05E-47 | 505 | 663 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.808 | 514 | 663 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-23 | 515 | 640 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005509 | Molecular Function | calcium ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1096 aa Download sequence Send to blast |
MRDKDSNPNV HERQSFNGSF VSMEEPKPET RAGPGLISCT TFNILAPIYK RIDQQNQGLR 60 ESQFSSFWVT RNQKILDWLL YESSSIVCLQ EFWVGNEEFV NMYLKRLGDA GYSTFKLART 120 NNRGDGLLTA VRSDCFRVLN YRELHFNDFG DRVAQLLHVQ LTAPFSQIQR GNLQQEILIV 180 NTHLLFPHDS SLCIVRLHQV YKILQFVEAY QNENKLNHMP IILCGDWNGS KRGHVYKFLR 240 SQGFESTYDT AHQYTDNDAH KWVSHRNHRG NICGVDFIWL CNPNKSRKPL KTSWCEAVFG 300 ILRRQLRKAS MAENDAFAFL KGDNHVDFIT SLAFCEALRQ ETRDLWIQAD TDANGVLDYE 360 EFKSLALQNM IWSCTGSDQK ESLTGSRKES EEDSKEALGF KVKNAVLYPS EAEKGIWPEN 420 YTLSDHARLT VEPCIADTDQ SLLGSRFTSV VHASMEAKAS QTVTREPHQE AATVRGTRQN 480 IGGNIYISTV VTEQPQEHSL FDESWPGMAT SASLPVGFRF HPTEEELIDH YLKKKIKGHD 540 FNDVIPEIDI CSYEPWDLPG FSSIRSDDEE WFYFSRPDYK TKGNSRNRAT ERGFWKITGV 600 EREIKARRSK ALIGKKRTLT FYTGKVRSGQ KTGWVIHEYY IPENLLPNAV RQRDFVLCRL 660 KKKDESADNE ACGQGEVCQT STDNLSDFQN LVANLGRPSS PEENTRPEEI FATLFSSHEP 720 PDYFASILGG SFLHENAGSD DHLDLQSAFR HEDSDEGDFS LEDIPRTNLF NHSSEPLSTL 780 RKVYDEGIHR QKKASSVNVA TTLPQNIGRV RSVNMEESEY EPKYVLQAGG SSSDTLSSAL 840 VTYKSYLNEK GGRKGEMITG GAELQSGPQL PLRPDDYITQ AKVRNMTAKS YQGQIKQGFK 900 PQEVKYPSMV PEKALDPDKP WRNDEQKGMK TKQIGTTIID WKSSFIVWKE SPLSLGSCPP 960 AADEAAGLAT SLKPTRTTHG NAGEESNDAQ ESRLLHLSKF LYDITLSQLS DSVKCAMEAK 1020 GEGQEKAEEA MEAEVTQVAE PPMLKKARLR LMKLEIREKT AVIATDVNQT IIGTSIAKLA 1080 RDLLINTKHT ARSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-30 | 510 | 667 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-30 | 510 | 667 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-30 | 510 | 667 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-30 | 510 | 667 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-30 | 510 | 667 | 16 | 172 | NAC domain-containing protein 19 |
4dul_A | 1e-30 | 510 | 667 | 13 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-30 | 510 | 667 | 13 | 169 | NAC domain-containing protein 19 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23394.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1907 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 6e-44 | NAC 014 |
Link Out ? help Back to Top | |
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Phytozome | mrna23394.1-v1.0-hybrid |