PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23394.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 1096aa    MW: 123864 Da    PI: 6.5165
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23394.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.21.1e-425146401127
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lp+GfrFhPt+eel+++yLkkk++g++++   vi+e+di+++ePwdLp  ++++++++ew++Fs+ d k+ +g+ +nrat++g+Wk
  mrna23394.1-v1.0-hybrid 514 LPVGFRFHPTEEELIDHYLKKKIKGHDFND--VIPEIDICSYEPWDLPgfSSIRSDDEEWFYFSRPDYKT-KGNSRNRATERGFWK 596
                              79***********************99655..9***************6448889999*******99986.79999********** PP

                      NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                               tg ++e++++ +++l+g k+tL+fy+g+ ++g+kt Wv+hey 
  mrna23394.1-v1.0-hybrid 597 ITGVEREIKARrSKALIGKKRTLTFYTGKVRSGQKTGWVIHEYY 640
                              *********9856667***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562191.2E-2734250IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.101.1E-841233IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033723.2E-1341288IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:1.10.238.107.3E-4238247IPR011992EF-hand domain pair
PROSITE profilePS502229.409337372IPR002048EF-hand domain
Gene3DG3DSA:1.10.238.107.3E-4339365IPR011992EF-hand domain pair
PROSITE patternPS000180350362IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF1019414.05E-47505663IPR003441NAC domain
PROSITE profilePS5100549.808514663IPR003441NAC domain
PfamPF023655.0E-23515640IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1096 aa     Download sequence    Send to blast
MRDKDSNPNV HERQSFNGSF VSMEEPKPET RAGPGLISCT TFNILAPIYK RIDQQNQGLR  60
ESQFSSFWVT RNQKILDWLL YESSSIVCLQ EFWVGNEEFV NMYLKRLGDA GYSTFKLART  120
NNRGDGLLTA VRSDCFRVLN YRELHFNDFG DRVAQLLHVQ LTAPFSQIQR GNLQQEILIV  180
NTHLLFPHDS SLCIVRLHQV YKILQFVEAY QNENKLNHMP IILCGDWNGS KRGHVYKFLR  240
SQGFESTYDT AHQYTDNDAH KWVSHRNHRG NICGVDFIWL CNPNKSRKPL KTSWCEAVFG  300
ILRRQLRKAS MAENDAFAFL KGDNHVDFIT SLAFCEALRQ ETRDLWIQAD TDANGVLDYE  360
EFKSLALQNM IWSCTGSDQK ESLTGSRKES EEDSKEALGF KVKNAVLYPS EAEKGIWPEN  420
YTLSDHARLT VEPCIADTDQ SLLGSRFTSV VHASMEAKAS QTVTREPHQE AATVRGTRQN  480
IGGNIYISTV VTEQPQEHSL FDESWPGMAT SASLPVGFRF HPTEEELIDH YLKKKIKGHD  540
FNDVIPEIDI CSYEPWDLPG FSSIRSDDEE WFYFSRPDYK TKGNSRNRAT ERGFWKITGV  600
EREIKARRSK ALIGKKRTLT FYTGKVRSGQ KTGWVIHEYY IPENLLPNAV RQRDFVLCRL  660
KKKDESADNE ACGQGEVCQT STDNLSDFQN LVANLGRPSS PEENTRPEEI FATLFSSHEP  720
PDYFASILGG SFLHENAGSD DHLDLQSAFR HEDSDEGDFS LEDIPRTNLF NHSSEPLSTL  780
RKVYDEGIHR QKKASSVNVA TTLPQNIGRV RSVNMEESEY EPKYVLQAGG SSSDTLSSAL  840
VTYKSYLNEK GGRKGEMITG GAELQSGPQL PLRPDDYITQ AKVRNMTAKS YQGQIKQGFK  900
PQEVKYPSMV PEKALDPDKP WRNDEQKGMK TKQIGTTIID WKSSFIVWKE SPLSLGSCPP  960
AADEAAGLAT SLKPTRTTHG NAGEESNDAQ ESRLLHLSKF LYDITLSQLS DSVKCAMEAK  1020
GEGQEKAEEA MEAEVTQVAE PPMLKKARLR LMKLEIREKT AVIATDVNQT IIGTSIAKLA  1080
RDLLINTKHT ARSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-3051066713169NO APICAL MERISTEM PROTEIN
1ut4_B1e-3051066713169NO APICAL MERISTEM PROTEIN
1ut7_A1e-3051066713169NO APICAL MERISTEM PROTEIN
1ut7_B1e-3051066713169NO APICAL MERISTEM PROTEIN
3swm_A1e-3051066716172NAC domain-containing protein 19
3swm_B1e-3051066716172NAC domain-containing protein 19
3swm_C1e-3051066716172NAC domain-containing protein 19
3swm_D1e-3051066716172NAC domain-containing protein 19
3swp_A1e-3051066716172NAC domain-containing protein 19
3swp_B1e-3051066716172NAC domain-containing protein 19
3swp_C1e-3051066716172NAC domain-containing protein 19
3swp_D1e-3051066716172NAC domain-containing protein 19
4dul_A1e-3051066713169NAC domain-containing protein 19
4dul_B1e-3051066713169NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23394.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF190722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.26e-44NAC 014