PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23316.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family AP2
Protein Properties Length: 459aa    MW: 49883.6 Da    PI: 7.8136
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23316.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.4e-17152201155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aaka+++a+ k++g
  mrna23316.1-v1.0-hybrid 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAAKAYDRAAIKFRG 201
                              78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-15152209IPR016177DNA-binding domain
PfamPF008474.5E-9152201IPR001471AP2/ERF domain
PROSITE profilePS5103217.214153209IPR001471AP2/ERF domain
CDDcd000181.97E-23153208No hitNo description
Gene3DG3DSA:3.30.730.101.5E-16153209IPR001471AP2/ERF domain
SMARTSM003802.9E-31153215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLDLNVDIIS STIDQSSYDE KSRALEAEKL REDSGTSDSS VVNAEEDSYS NNTSPFIFDI  60
LKKDKHGLCN NREDQIVPSP EFATKSLFPV TGDGGEGGGG EFGVLASSNT TSRPQWLNLS  120
FAESGGQAEL KVVQQKQQQA RKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHSAAK AYDRAAIKFR GVDADINFVL SDYEEDLKQM RHLNKEEFVH VLRRQSNGAS  240
RGNSKFRGVA AAAATAAAMP KIGPFEVHMG QLIPGNKLIK GNGREGLSNF DPSIYEGEVV  300
VGASTEGSGH NLDLSLGISQ PSTGEKRKAF EILSKERPMV NGSASAAGGQ PLHALAMLSK  360
HPALYPEIYP GFLQKTEEMA TDHHKRIQAV SSPRFSNWAW QMNGNNNNVT PVPVFSIAAS  420
SGFSSSIATV PPSATNHLPP ILQDSSTYNL RLPFPTSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23316.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004307425.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X1
TrEMBLA0A3Q8TA350.0A0A3Q8TA35_FRAAN; Transcription factor AP218
STRINGXP_004307425.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-63related to AP2.7