PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23280.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ARF
Protein Properties Length: 643aa    MW: 70856.3 Da    PI: 6.7832
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23280.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22116217199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD 
  mrna23280.1-v1.0-hybrid 116 FAKTLTQSDANNGGGFSVPRFCAETIfprldysADPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNNKKLVAGDA 199
                              89*********************999****996555555..89******************************************* PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF   + +++ l+v+++r+
  mrna23280.1-v1.0-hybrid 200 IVFF--RAENGDLCVGIRRA 217
                              ****..3488889****996 PP
2Auxin_resp106.53e-35277359183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa+ a ++++FevvY+Prast+eF+vk+++v++a++++++ G Rfkm fetedss++++ +Gtv++v+ +dp rWp+S+Wr L+
  mrna23280.1-v1.0-hybrid 277 AATLAVSGQPFEVVYYPRASTPEFCVKAASVRAAMQIRWCSGIRFKMPFETEDSSRISWfMGTVSSVHYADP-RWPDSPWRYLQ 359
                              6788999*****************************************************************.********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-36108219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-28112218IPR015300DNA-binding pseudobarrel domain
CDDcd100175.72E-21115216No hitNo description
SMARTSM010191.3E-21116218IPR003340B3 DNA binding domain
PfamPF023626.6E-21116217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957116218IPR003340B3 DNA binding domain
PfamPF065071.8E-29277359IPR010525Auxin response factor
PROSITE profilePS5174511.485579642IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MKNNNNHSEK GLDSQFWHAC AGGMVQLPPI NSKVFYFPQG HAEYAQGNVD FGNSRIPALI  60
LSRISAIRYM ADPETDEVYA KMRLVPVRER GFDFEDDGVV GNNNGVQENP EKPSSFAKTL  120
TQSDANNGGG FSVPRFCAET IFPRLDYSAD PPVQTILAKD VHGEIWKFRH IYRGTPRRHL  180
LTTGWSNFVN NKKLVAGDAI VFFRAENGDL CVGIRRAKRG IGGGPEYPCG WNTPSGNSCS  240
QYDGYSGFSR ENGNKLMDKN SSGTTRGRVK AEHVIEAATL AVSGQPFEVV YYPRASTPEF  300
CVKAASVRAA MQIRWCSGIR FKMPFETEDS SRISWFMGTV SSVHYADPRW PDSPWRYLQV  360
AWDEPDLLQN VRSVSPWLVE LVSSIPAIDL SPFSPPRKKL RLQQTPDYSL LGQLPMQSVY  420
GNFLTSSNTM CNLSDNIPAG IQGARQAHFG LSSTNFLNNL PPGLIPVGFQ QLGHVPPPGT  480
PGGNFMRIAE TNEDIPCRVT EGIPYHNLRD NDEIKTPHIF LFGQLIVEGQ QMSKSSSGDD  540
SSSCPEKTGN SSDGSGSALH RNDSVENCSD GGSDHNLETG LCKVFVKSGD AGTLDLSVFR  600
SYQELYRKLA NMFGKENSDM LSNVLYRDAT GAIRHTGDEP FR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-73138040388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23280.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004308786.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P6SJD90.0A0A2P6SJD9_ROSCH; Auxin response factor
STRINGXP_004308786.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]