PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23260.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | FAR1 | ||||||||
Protein Properties | Length: 236aa MW: 26889.4 Da PI: 8.9134 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 61.3 | 2.9e-19 | 65 | 150 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 k+Y++Y+k +GF+v+k++s+k+ ++g+ + tf+Cs+ gk++++++ + + r++t+ +Ckakl+ + dgkw+v++++l Hn mrna23260.1-v1.0-hybrid 65 KYYRSYGKGMGFEVCKRTSSKE-DDGKLKYITFTCSRFGKPNSKSRY---AFKFRPVTKSDCKAKLNANFLPDGKWVVSTIVLGHN 146 69****************9998.8899****************9988...9999******************************** PP FAR1 87 Hela 90 H+l+ mrna23260.1-v1.0-hybrid 147 HDLS 150 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-16 | 65 | 150 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEGNIENEMD VGYEEEEDID YGNEVISASS NVEENIATIE SENVKEKIEE PKIGLVFDSI 60 DELEKYYRSY GKGMGFEVCK RTSSKEDDGK LKYITFTCSR FGKPNSKSRY AFKFRPVTKS 120 DCKAKLNANF LPDGKWVVST IVLGHNHDLS TPSKRRYYKT ERDLPSRVKK RLATNDIAGV 180 RPKTSFKSFV VEAGGHENLT FLEKDVRNYL DKIRRLRLGG GRCCCYSKVF PKNAR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 171 | RRYYKTERDLPSRVKKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23260.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024161868.1 | 1e-111 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2N9J8F9 | 1e-66 | A0A2N9J8F9_FAGSY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 5e-19 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | mrna23260.1-v1.0-hybrid |