PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | mrna23226.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24187.6 Da PI: 5.1871 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.5 | 8.3e-42 | 54 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q mrna23226.1-v1.0-hybrid 54 PCAACKILRRRCVERCVLAPYFPPSDPIKFIIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEANARLRDPVYGCAGAICNLQKQ 139 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 + +l+++la++++e mrna23226.1-v1.0-hybrid 140 VTELQSQLAKAQAE 153 **********9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.964 | 53 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-42 | 54 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MECNGNTAAT ATTTTPHSSF TCSPLTSSSS SSPLISSSSP ATSPMPPPAV VVSPCAACKI 60 LRRRCVERCV LAPYFPPSDP IKFIIAHRVF GASNIIKFLQ DLPESQRADA VSSMVYEANA 120 RLRDPVYGCA GAICNLQKQV TELQSQLAKA QAEIINLQCQ QGNLIALICM DMSSTTATNT 180 QQSKEAVVVP ILQQQPYSNL NIDTSCFLDE NNLGTAWDWE PLWT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-42 | 53 | 161 | 10 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-42 | 53 | 161 | 10 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | mrna23226.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004307415.1 | 1e-165 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 4e-70 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2P6SJM2 | 1e-111 | A0A2P6SJM2_ROSCH; Putative transcription factor AS2-LOB family | ||||
STRING | XP_004307415.1 | 1e-164 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-64 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | mrna23226.1-v1.0-hybrid |