PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23099.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 362aa    MW: 40303.5 Da    PI: 6.7168
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23099.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.73.2e-25221371116
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppG+rF P++ee + +yL kkv + k+++  vi+++d+yk+eP dL++ + ++e+++yfF++ +kk+++g+rk+r t +g Wk t
  mrna23099.1-v1.0-hybrid  22 LPPGVRFVPSQEEFI-YYLLKKVYTGKIDFGGVIRDIDLYKYEPDDLKALAFEGESRLYFFTPLQKKHTKGTRKKRDTVHGLWKGT 106
                              79*************.**************999**************96555678899**************************** PP

                      NAM  87 gkdkevlskkgel.vglkktLvfykgrapkg 116
                               + k++++++++         v yk+r  +g
  mrna23099.1-v1.0-hybrid 107 QTPKTIKDSDNKPlENWALCVVHYKKRGGNG 137
                              *******985554245555666776665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-2420136IPR003441NAC domain
PROSITE profilePS5100523.03522169IPR003441NAC domain
PfamPF023655.1E-823113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVLSYVLPTE IKEEELEWKK GLPPGVRFVP SQEEFIYYLL KKVYTGKIDF GGVIRDIDLY  60
KYEPDDLKAL AFEGESRLYF FTPLQKKHTK GTRKKRDTVH GLWKGTQTPK TIKDSDNKPL  120
ENWALCVVHY KKRGGNGNNN EKEDNKSRST NKSSSTGSRS EAMGSTFQTS LIGSASECAS  180
TMSSQNGNSC QTPTPSKNNT IPFGYSNSSM GSSSSQPRPN WSYNVNPKKQ QQSSTSDQPL  240
LTRGTYNIAS HDDHDSSGHA LFPKRTPSGI GSPNCDQTPN CSNTNDLSLN NNVSGDQMLS  300
DFDFMNDSTF SDLYTMLHDE SLQSSLPQQR DDDTQNINPS INPPVHFLLV NVPDEMYQSS  360
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-12121125105Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23099.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463331.10.0PREDICTED: NAC domain-containing protein 77-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-19vascular related NAC-domain protein 1