PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna23099.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40303.5 Da PI: 6.7168 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 80.7 | 3.2e-25 | 22 | 137 | 1 | 116 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppG+rF P++ee + +yL kkv + k+++ vi+++d+yk+eP dL++ + ++e+++yfF++ +kk+++g+rk+r t +g Wk t mrna23099.1-v1.0-hybrid 22 LPPGVRFVPSQEEFI-YYLLKKVYTGKIDFGGVIRDIDLYKYEPDDLKALAFEGESRLYFFTPLQKKHTKGTRKKRDTVHGLWKGT 106 79*************.**************999**************96555678899**************************** PP NAM 87 gkdkevlskkgel.vglkktLvfykgrapkg 116 + k++++++++ v yk+r +g mrna23099.1-v1.0-hybrid 107 QTPKTIKDSDNKPlENWALCVVHYKKRGGNG 137 *******985554245555666776665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-24 | 20 | 136 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.035 | 22 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.1E-8 | 23 | 113 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MVLSYVLPTE IKEEELEWKK GLPPGVRFVP SQEEFIYYLL KKVYTGKIDF GGVIRDIDLY 60 KYEPDDLKAL AFEGESRLYF FTPLQKKHTK GTRKKRDTVH GLWKGTQTPK TIKDSDNKPL 120 ENWALCVVHY KKRGGNGNNN EKEDNKSRST NKSSSTGSRS EAMGSTFQTS LIGSASECAS 180 TMSSQNGNSC QTPTPSKNNT IPFGYSNSSM GSSSSQPRPN WSYNVNPKKQ QQSSTSDQPL 240 LTRGTYNIAS HDDHDSSGHA LFPKRTPSGI GSPNCDQTPN CSNTNDLSLN NNVSGDQMLS 300 DFDFMNDSTF SDLYTMLHDE SLQSSLPQQR DDDTQNINPS INPPVHFLLV NVPDEMYQSS 360 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-12 | 12 | 112 | 5 | 105 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna23099.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011463331.1 | 0.0 | PREDICTED: NAC domain-containing protein 77-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-19 | vascular related NAC-domain protein 1 |
Link Out ? help Back to Top | |
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Phytozome | mrna23099.1-v1.0-hybrid |