PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23043.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LBD
Protein Properties Length: 328aa    MW: 36637.9 Da    PI: 6.0547
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23043.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601171.1e-36331321100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              aCaaCk++rrkCa+dC+lap fp++++++f  +hklFG+sn++k++k+l++ e+e+am+++++++++ra+dPv G++++i++lq+ 
  mrna23043.1-v1.0-hybrid  33 ACAACKYQRRKCAPDCILAPFFPHDRQHQFLHAHKLFGVSNITKIIKTLNHFEKETAMRTIIFQSDVRASDPVGGCYRIIQELQRL 118
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++  kael+ + ++
  mrna23043.1-v1.0-hybrid 119 IDYNKAELDIVLHQ 132
                              ********988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.05632133IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-3433128IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSITSGSVVT TTSSPTTPNS SSSSTKGNGN TQACAACKYQ RRKCAPDCIL APFFPHDRQH  60
QFLHAHKLFG VSNITKIIKT LNHFEKETAM RTIIFQSDVR ASDPVGGCYR IIQELQRLID  120
YNKAELDIVL HQLAICRAQA QQQHQQQPIM QQIPEVGDTT CADQMISVDP LSLYGNPMHF  180
HYLQPQQPHN VQVTEQPDQG APYVFMQNSN GNVNQHMVPE DMNMWAMQDS MSSLHIKHGM  240
SPGDCEDIKP FVDIPCDDDQ RNHEIKFQPD AIGDQSDDAL LKIENGNLKE DQQSESAAQQ  300
VHHHHHQDHG DLKGEASLFM TLTNCSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-24131271105LOB family transfactor Ramosa2.1
5ly0_B2e-24131271105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23043.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463318.10.0PREDICTED: LOB domain-containing protein 22
TrEMBLA0A2P6RY600.0A0A2P6RY60_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_008228290.11e-108(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-51LOB domain-containing protein 22