PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna23037.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C2H2
Protein Properties Length: 541aa    MW: 57809.1 Da    PI: 8.7559
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna23037.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-0590112123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              + C++C+k F r  nL+ H r H
  mrna23037.1-v1.0-hybrid  90 FICEICNKGFQRDQNLQLHRRGH 112
                              89*******************88 PP
2zf-C2H2120.00064166188123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC +C+k +  +s+ k H +t+
  mrna23037.1-v1.0-hybrid 166 WKCDKCSKKYAVQSDWKAHSKTC 188
                              58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.47E-789112No hitNo description
Gene3DG3DSA:3.30.160.601.5E-589112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02290112IPR015880Zinc finger, C2H2-like
PfamPF121716.6E-590112IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.84590112IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SMARTSM00355120131161IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-4154187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.47E-7161186No hitNo description
SMARTSM00355150166186IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MKALQFQQQQ QVDENMSNLT SASGDQASVS SGNRSTEIGT SNFSQQYFPP PPPQANSQGV  60
KRKRNQPGNP DPDAEVIALS PKTLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ  120
RTSKEVKKKV YVCPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD  180
WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAEE SARATNPTPL QTLSSPPPPS  240
HQSQINLMGG GGGPHLNFNP HGHDLHAYSA FMKKEHNNDH DQQIGSFSST SSLLPPWLAS  300
GPPPTAPSIF SGNQDHHHDF QQNLELGPNP NPSLGPTLPQ FQVPAAAAAL SSPPHMSATA  360
LLQKAAQMGA TMSSSSSTSG SLSVPAGIMT RSHQGGHVSD FGGHVSSTTN GGAGGAGGGS  420
VHQQQQQHQQ QAASSLLHDM MNSLSSGTGF EGTSFEDAFG GMLGISKIKD GSRSGGADEN  480
GGQGGGEGLT RDFLGLKAMS HSDMMLNIAG LGSCVSNNNS SSTRDSSQIN QVPQKPNWQG  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35162226367Zinc finger protein JACKDAW
5b3h_F7e-35162226367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna23037.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004297563.10.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F51e-134IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2P6RY510.0A0A2P6RY51_ROSCH; Putative transcription factor C2H2 family
STRINGXP_004297563.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-115indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]