PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22967.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family M-type_MADS
Protein Properties Length: 292aa    MW: 33395.3 Da    PI: 9.8769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22967.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.1e-171150342
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                             i n+s r+ tf kR++g++KK +EL +LCd++++ ii+s+
  mrna22967.1-v1.0-hybrid 11 ITNDSARKATFKKRKKGLMKKVSELTTLCDIDACAIIYSP 50
                             89*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.465149IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-25160IPR002100Transcription factor, MADS-box
CDDcd002661.97E-22285No hitNo description
SuperFamilySSF554553.4E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-10323IPR002100Transcription factor, MADS-box
PfamPF003193.5E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MTRKKVKLTY ITNDSARKAT FKKRKKGLMK KVSELTTLCD IDACAIIYSP YDSQPEVWPS  60
PLGVHRVLAQ FKTMPEMEQS KKMVNQETFL RQRINKAQEQ LKKHKKDNRE KEMARVMFQS  120
LTGKTLQGLT MSDLTDLNWV IDQHMKEIQL RMKNIKEGSV KSQNQVQGSQ GVPAAVDHKN  180
TTMKSNGEGS SNNMAMKSGE EGSNMEHRIL DRQAFDHIQN MEAMQLHMLQ MAAQKQHNSW  240
FVDMMNAPPP PPHPDHHQQM GFTGEEMMLP FADHNNNTMW PNPPADGFNF P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLTYITNDSARKATFKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22967.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011466212.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A2P6R7W11e-164A0A2P6R7W1_ROSCH; Putative transcription factor MADS-type1 family
STRINGXP_004304924.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-59AGAMOUS-like 80