PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22897.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 362aa    MW: 39956.5 Da    PI: 7.8386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22897.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.4e-08265305954
                              HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  mrna22897.1-v1.0-hybrid 265 ARQRRERISERIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 305
                              69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.212256305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.74E-14262323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-13262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-12264315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5265305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-5278310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAQQHWGGKS LAAEQLCQVP FIISRPFSMN SLINSAFVVD DHHQNKARPA ATATCSIESL  60
DCLFSATNSN TAEDTTCLDQ DDAINSTIAP NCRRSNLWNF GTGSTTTAVS SESETTNNAS  120
RPNKETQSFS KRCRNDDQSD QLKFYAENYS QHFDLLQTDS STTTTEGGGF RLISENPPKA  180
KKLKSSSDQK STTPSTTNIN FQQPTSSSLS GSATDQEPDP EVIAQMKEMI YRAAAFRPVN  240
LGIEMVERPK RKNVKISSDP QTVAARQRRE RISERIRVLQ KLVPGGSKMD TASMLDEAAN  300
YLKFLRSQVK ALENLGQKID SMSNCLPPAS FAFSFNPSFP MQTHHVPLHL HPNHNIHQPP  360
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22897.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463350.10.0PREDICTED: transcription factor bHLH87
TrEMBLA0A2P6RXS00.0A0A2P6RXS0_ROSCH; Putative transcription factor bHLH family
STRINGXP_004297624.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-55bHLH family protein