PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna22888.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

SBP

Protein Properties

Length: 1034aa MW: 114676 Da PI: 6.8971

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna22888.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.2	2.7e-39	149	226	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC++h++a+ ++v ++ qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk+++ mrna22888.1-v1.0-hybrid 149 VCQVEDCKADLSHAKDYHRRHKVCHMHARATRAMVGNILQRFCQQCSRFHVLQEFDEGKRSCRKRLAGHNRRRRKTHP 226 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.7E-31	144	211	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.505	147	224	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.24E-36	148	230	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-28	150	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.87E-7	768	917	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.0E-6	803	911	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.22E-7	804	909	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1034 aa Download sequence Send to blast
MEAFGGKPRS LYGPVVPDME AVGKRSLEWD LNDWRWDGHV FTATPLNSVP SDCRSRQLFP 60 IGPETPSNAG WSNSSSSGSD EIGLGNEKGK RELEKRRRGV IVENEEVDDE AGSLNLKLGG 120 QVYPILEEDV KTGKKMKTKI VGTTSNRAVC QVEDCKADLS HAKDYHRRHK VCHMHARATR 180 AMVGNILQRF CQQCSRFHVL QEFDEGKRSC RKRLAGHNRR RRKTHPDTVV NGGSMNDERG 240 SSYILVTLLR ILSNMQSNSS DQTKDQDLLS HLLKNLDNNN GTTDGRNVSA LLQGSQVLLN 300 GGASVQTVQK VPHLDFNGSE PGRPSVSTSK MDDCINLDGH LRPTGQCPTG PASDKLLNMI 360 SPAGGDLGSQ ALSGVQTTKS FSSRYSLPSK PVAQEYGRIQ LNEIDLNNTY DDSQEYLENL 420 GRSHFPVNPG SESHGDPFSI QHDSQKSSPP QTSGNSDSTA TQSPSSSSGE AQSCTDRIVF 480 KLFGKDPSDL PFGLRSQILG WLSSTPTDIE SYIRPGCIIL TIYLRLEKST WEELCYHLGS 540 SLVKLLDASS DPLWRTGWVY TRVQHVVAFV YNGQVVLDTP LPLRSHKTCR ISCIKPIAVS 600 LSEGAEFVVK GFNLSSSTTR LLCALEGKYL AQETCHDLME GTDTTSEHDE LQCLRFSCSI 660 PDVTGRGFIE VEDHGLSSSF FPFIVAEQEV CSEICMLEAA IEVADFANDL QTDPEIMEAK 720 NQAMDFIHEL GWLLHKSRVK FRLGQTDPKL DLFSFQRFRL LMEFSMERDW CAVVKKLLGI 780 LYEGTVDAGE HLSIELALLD MGLLHRAVQR NCKPMVEFLL RFVPDKGLDK AELEEKQQVD 840 RNINRFLFKP DVVGPMGLTP LHVAASTDGC EYVLDALTND PGKVGIKAWK TARDSTGLTP 900 YDYACLRGRY SYLHIVQRKI SKAESGHVVL DIPGTILDKN TKQKQIDGHK SSKISSFHTE 960 KIAMKEIQGD CKLCCQKLAY GGSTRSLLYR PAMLSMLAIA AVCVCVALLF KSSPEVVFVF 1020 QPFRWELLKY GPS*

Sequence ? help Back to Top

Protein Sequence Length: 1034 aa Download sequence Send to blast

MEAFGGKPRS LYGPVVPDME AVGKRSLEWD LNDWRWDGHV FTATPLNSVP SDCRSRQLFP  60
IGPETPSNAG WSNSSSSGSD EIGLGNEKGK RELEKRRRGV IVENEEVDDE AGSLNLKLGG  120
QVYPILEEDV KTGKKMKTKI VGTTSNRAVC QVEDCKADLS HAKDYHRRHK VCHMHARATR  180
AMVGNILQRF CQQCSRFHVL QEFDEGKRSC RKRLAGHNRR RRKTHPDTVV NGGSMNDERG  240
SSYILVTLLR ILSNMQSNSS DQTKDQDLLS HLLKNLDNNN GTTDGRNVSA LLQGSQVLLN  300
GGASVQTVQK VPHLDFNGSE PGRPSVSTSK MDDCINLDGH LRPTGQCPTG PASDKLLNMI  360
SPAGGDLGSQ ALSGVQTTKS FSSRYSLPSK PVAQEYGRIQ LNEIDLNNTY DDSQEYLENL  420
GRSHFPVNPG SESHGDPFSI QHDSQKSSPP QTSGNSDSTA TQSPSSSSGE AQSCTDRIVF  480
KLFGKDPSDL PFGLRSQILG WLSSTPTDIE SYIRPGCIIL TIYLRLEKST WEELCYHLGS  540
SLVKLLDASS DPLWRTGWVY TRVQHVVAFV YNGQVVLDTP LPLRSHKTCR ISCIKPIAVS  600
LSEGAEFVVK GFNLSSSTTR LLCALEGKYL AQETCHDLME GTDTTSEHDE LQCLRFSCSI  660
PDVTGRGFIE VEDHGLSSSF FPFIVAEQEV CSEICMLEAA IEVADFANDL QTDPEIMEAK  720
NQAMDFIHEL GWLLHKSRVK FRLGQTDPKL DLFSFQRFRL LMEFSMERDW CAVVKKLLGI  780
LYEGTVDAGE HLSIELALLD MGLLHRAVQR NCKPMVEFLL RFVPDKGLDK AELEEKQQVD  840
RNINRFLFKP DVVGPMGLTP LHVAASTDGC EYVLDALTND PGKVGIKAWK TARDSTGLTP  900
YDYACLRGRY SYLHIVQRKI SKAESGHVVL DIPGTILDKN TKQKQIDGHK SSKISSFHTE  960
KIAMKEIQGD CKLCCQKLAY GGSTRSLLYR PAMLSMLAIA AVCVCVALLF KSSPEVVFVF  1020
QPFRWELLKY GPS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-28	149	223	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna22888.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004297083.1	0.0	PREDICTED: squamosa promoter-binding-like protein 12
TrEMBL	A0A2P6QZL3	0.0	A0A2P6QZL3_ROSCH; Putative transcription factor SBP family
STRING	XP_004297083.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	mrna22888.1-v1.0-hybrid