PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna22887.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

YABBY

Protein Properties

Length: 448aa MW: 49343 Da PI: 10.6251

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna22887.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	133.6	2.4e-41	54	212	29	159
YABBY 29 tslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee..................lleelkveeenlksnvekeesa 92 ++ +vvtvrCGhC++llsvn+ as ++++ + ++ +++ +e+++ ++ + +++s+ mrna22887.1-v1.0-hybrid 54 AATTTVVTVRCGHCANLLSVNIGAASlqyhSITPSATAAAAAASPHphphtqhyhshpnifthqKQHQVSSEDSSSNKDYGSSSSS 139 456789**************9988655434444444444444446777888888888776432222222223333333333333 PP YABBY 93 stsvssekl.......senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 sts + +k+ +++++ + pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aakn mrna22887.1-v1.0-hybrid 140 STSSKCNKFaaapafdQSSTTVDQPRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 212 33333334478887766667778899888.9****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.8E-40	54	212	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-6	162	209	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MGGFNGFRSG LVAFVLSFII DRPYLASPCP PSWRLLMSDP MQVSVPAFNG PLTAATTTVV 60 TVRCGHCANL LSVNIGAASL QYHSITPSAT AAAAAASPHP HPHTQHYHSH PNIFTHQKQH 120 QVSSEDSSSN KDYGSSSSSS TSSKCNKFAA APAFDQSSTT VDQPRISPIR PPEKRQRVPS 180 AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNIPLDSSSM FRPAQPSTTE AMVIFSWMRA 240 TPQAVDSSCF NSGRSLLMFG LWMMEIWLFH IPFRSSFRLI RVIPAASVPN ITTTTETETI 300 RVYKKQQNET FKSNLKACIH PKTLAPKPNL KWLSLLTSAD PQTRTPHIRD PTVPIQARRH 360 KHSIPILNRY PTAHAAVDLA GGAATESVLR RMEGLNEAMS LKRGLKLGNG RREEKGSEGR 420 EGARWESGEG RGEEEKGLRK KNEKGRR*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MGGFNGFRSG LVAFVLSFII DRPYLASPCP PSWRLLMSDP MQVSVPAFNG PLTAATTTVV  60
TVRCGHCANL LSVNIGAASL QYHSITPSAT AAAAAASPHP HPHTQHYHSH PNIFTHQKQH  120
QVSSEDSSSN KDYGSSSSSS TSSKCNKFAA APAFDQSSTT VDQPRISPIR PPEKRQRVPS  180
AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNIPLDSSSM FRPAQPSTTE AMVIFSWMRA  240
TPQAVDSSCF NSGRSLLMFG LWMMEIWLFH IPFRSSFRLI RVIPAASVPN ITTTTETETI  300
RVYKKQQNET FKSNLKACIH PKTLAPKPNL KWLSLLTSAD PQTRTPHIRD PTVPIQARRH  360
KHSIPILNRY PTAHAAVDLA GGAATESVLR RMEGLNEAMS LKRGLKLGNG RREEKGSEGR  420
EGARWESGEG RGEEEKGLRK KNEKGRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna22887.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-24	YABBY family protein

Link Out ? help Back to Top
Phytozome	mrna22887.1-v1.0-hybrid