PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22872.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family ERF
Protein Properties Length: 277aa    MW: 30235.7 Da    PI: 5.5321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22872.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-194392255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  mrna22872.1-v1.0-hybrid 43 RFLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 92
                             678******.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.13E-314299No hitNo description
SMARTSM003806.6E-3543106IPR001471AP2/ERF domain
PROSITE profilePS5103220.70543100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2944100IPR001471AP2/ERF domain
PRINTSPR003673.5E-84455IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-2144101IPR016177DNA-binding domain
PfamPF008474.0E-124492IPR001471AP2/ERF domain
PRINTSPR003673.5E-86682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEYFMTNSPS KGGNSPSSSS SKSKKKPQQQ QPQQQQQQQQ ETRFLGVRRR PWGRYAAEIR  60
DPSTKERHWL GTFDTAEEAA LAYDRAARSM RGSKARTNFV YSDMPHGSSV TSIISPDESQ  120
RDMSAFFTAP LQPQTQMITT HNNNNNNNNH HHQQQPFFTQ DPFEAYPFSG GSYGSYGPGS  180
GCGNGDGAGS HDNELPPLPP SVSSTCYGPG EVMGSDFYGF SEPTTTQGFD SIASGSYMGF  240
DSNEFVQHSP LFGSMPPVTD SGIDGFDLGS SSAYFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-204499359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22872.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011463706.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A3S8T9451e-149A0A3S8T945_FRAAN; Transcription factor ERF67
STRINGXP_009353495.11e-118(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39043161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.13e-38ERF family protein