PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22861.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 27707.9 Da PI: 4.5806 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.6 | 3e-05 | 51 | 110 | 2 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...................TTS-STCHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas................kapskKlsKaeiLe 45 r+ + Er R+++N+ +++Lr ++ +++ ka + K +K++ Le mrna22861.1-v1.0-hybrid 51 RTHATRDEREVREQLNDVIQQLRHVICTPMvqvhrdalnplrcregKALKLKDDKISNLE 110 7778888*********************98899999999999999877777777776665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MLTTLPLGLR LSSSLNSIWI KFKKVKPRIE PDAYDVEDPS SFPDGSSQFT RTHATRDERE 60 VREQLNDVIQ QLRHVICTPM VQVHRDALNP LRCREGKALK LKDDKISNLE EQFPDPIRSV 120 QVCHEFGYAP ELPDGTRPDI SNLIPMTTIL NWCDHNHADR PQPPDLASVN EDHDSTGKVN 180 EDRAELGQRA EAAREGVAKE EGLGGVRGGV GPEVEEARGG GDGVGRAEGE EVEGEAEPAV 240 EVFTIFLLLF * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22861.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | mrna22861.1-v1.0-hybrid |