PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22723.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | NAC | ||||||||
Protein Properties | Length: 403aa MW: 45460.6 Da PI: 4.4795 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 76.9 | 4.8e-24 | 9 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknrat 78 pG+rF P ++el+ yLk+ ++g++++ + + ++d+y ePw++ +++k+ +k++yfF++++k ++t+kr +r++ mrna22723.1-v1.0-hybrid 9 LPGMRFCPMEDELLLSYLKPMLSGQNVPGRNKvVFDCDLYGQqEPWEIWEAYKTkrpndlrLHKDLYFFTQHKKMKSTDKRIRRTV 94 59************************8775554999**996549****742222224333334588******************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sg+Wk + ++v+s +g+++glkk +++ +++++ ++ W++he+ l mrna22723.1-v1.0-hybrid 95 GSGTWKGNDSGNPVKS-SGREIGLKKRFTYENKKSK--HHGCWILHEFYL 141 ***************9.9999********9844443..599*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-26 | 7 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.203 | 8 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-15 | 10 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MEEIRNNQLP GMRFCPMEDE LLLSYLKPML SGQNVPGRNK VVFDCDLYGQ QEPWEIWEAY 60 KTKRPNDLRL HKDLYFFTQH KKMKSTDKRI RRTVGSGTWK GNDSGNPVKS SGREIGLKKR 120 FTYENKKSKH HGCWILHEFY LDRSLRDKKE KVKDYVLCLL RKNGDSKTKI EKKRKQREEE 180 DVLDACDDGE QSNTEQEVLE TQAKRQRTVC VPPVPTPSEV DAFIAKIEGF MECVQDDNSP 240 PSEAEAIGFQ GVEDGGLQQS ACEVQSDPSF VQQDPAGSNN DCGGGGLIDF HDFSRPSEAE 300 AIGFQGVEDV GLQQLACEVQ SSGPSFVPLP EEDFVMEQCF EELRNYEETE EQDPAGSNNV 360 CGGLIDHNGD DWINSISFSP EDNDFVSCEM LRNFLADTAG LP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-13 | 7 | 160 | 14 | 165 | Stress-induced transcription factor NAC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22723.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004306296.1 | 0.0 | PREDICTED: NAC domain-containing protein 67-like | ||||
TrEMBL | A0A2P6PAF8 | 1e-137 | A0A2P6PAF8_ROSCH; Putative transcription factor NAM family | ||||
STRING | XP_004306296.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF557 | 24 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 3e-16 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna22723.1-v1.0-hybrid |