PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22722.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 444aa    MW: 50136.7 Da    PI: 4.2439
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22722.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.65.8e-2491412128
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.......eekewyfFskrdkkyatgkrknrat 78 
                               pG+rF P ++el+  yLk+ ++g++++  +  + ++d+y   ePw++ +++k+        +k++yfF++++k ++t+kr +r++
  mrna22722.1-v1.0-hybrid   9 LPGMRFCPMEDELLLSYLKPMLSGQNVPGRNKvVFDCDLYGQqEPWEIWEAYKTkrpndlrLHKDLYFFTQHKKMKSTDKRIRRTV 94 
                              59************************8775554999**996549****742222224333334588******************** PP

                      NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               sg+Wk   + ++v+s +g+++glkk +++ +++++  ++  W++he+ l
  mrna22722.1-v1.0-hybrid  95 GSGTWKGNDSGNPVKS-SGREIGLKKRFTYENKKSK--HHGCWILHEFYL 141
                              ***************9.9999********9844443..599*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.18E-257162IPR003441NAC domain
PROSITE profilePS5100528.2038163IPR003441NAC domain
PfamPF023657.9E-1510140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEEIRNNQLP GMRFCPMEDE LLLSYLKPML SGQNVPGRNK VVFDCDLYGQ QEPWEIWEAY  60
KTKRPNDLRL HKDLYFFTQH KKMKSTDKRI RRTVGSGTWK GNDSGNPVKS SGREIGLKKR  120
FTYENKKSKH HGCWILHEFY LDRSLRDKKE KVKDYVLCLL RKNGDSKTKI EKKRKQREEE  180
DVLDACDDGE QSNTEQEELL ETQAKRQRTV CAPPVPTLSE VDAFVAELEG SMECVQDDNS  240
PPSEADAIGF QGVEDGGLQQ LALEVQSGPS FVPLPEEDFL MEQCFEELSN YEEREEQDPA  300
GSNNVCGPPV PTPSEVDAIF IAELEGSMEC VQNDFSRPSK AEAIGFQGVE DGGLQQLGCE  360
VQSGPSFVPL PEEDFLMEQC FEELRNYEET EEQDPAGSNN ICGGLIDHNS DDWINSISFS  420
PEDNDFVSCE MLSSFFADTA GLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-13716014165Stress-induced transcription factor NAC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22722.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004306296.10.0PREDICTED: NAC domain-containing protein 67-like
TrEMBLA0A2P6PAF81e-143A0A2P6PAF8_ROSCH; Putative transcription factor NAM family
STRINGXP_004306296.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-16NAC family protein