PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22702.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family GRAS
Protein Properties Length: 534aa    MW: 59343.7 Da    PI: 6.4642
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22702.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.22.1e-1151595321374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl 83 
                              lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La+rla  ++  +  + ps+ + k+   ++++  al+l
  mrna22702.1-v1.0-hybrid 159 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLASRLALVQPLGAVGFVPSKLNAKDyalMDKKEEALRL 244
                              689***************************************************9666666666777777777789999999**** PP

                     GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetge 163
                               +e++P ++f+h++aN+ Ilea+ege+ vH++D++++    +G QW  L+++L++R+++pp  +lRiTgvg      +++l+ +ge
  mrna22702.1-v1.0-hybrid 245 VYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTlglpHGDQWRGLIHSLTTRAGQPPvsRLRITGVGL----CADRLQIIGE 326
                              *********************************99873333667*************9999899********....********** PP

                     GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                               L+ +A++lg+++ef+  v+++le+l++e++++ +gE+l+Vn++lqlh +++es    +   +vL+++ +lsPkv+v+veq+++hn
  mrna22702.1-v1.0-hybrid 327 ELEAYADSLGLSVEFTC-VESNLENLKPEDIKLYEGEVLVVNSILQLHCVVKESRGALN---SVLQMIHELSPKVLVLVEQDSSHN 408
                              *****************.79*******************************88877777...8*********************** PP

                     GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                              ++ Fl rf+eal+yysa+fdsl+a lp+ +  r+k+E++++++ei+n+++ceg +r+erhe++ +Wr+r+++aGF+ +p++  +++
  mrna22702.1-v1.0-hybrid 409 GPFFLGRFMEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEEIKNIISCEGPARVERHERVDQWRRRMSRAGFQGAPIK--MMA 492
                              *******************************************************************************96..789 PP

                     GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              qak  l k k  +gy+v ee+g+lvlgWk+rp+v++S+W+
  mrna22702.1-v1.0-hybrid 493 QAKQWLGKNKvCEGYTVVEEKGCLVLGWKSRPIVAASCWK 532
                              **********9****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.717133513IPR005202Transcription factor GRAS
PfamPF035147.3E-113159532IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAPGHGRRFM TEHECTDHEI RSNRMSDLEL HGLNHSSMAC YSSYPYMASL DQEGSANDSS  60
SLINPYSVHE SRDRKRLKRT ISIDDSLSSI TSINGGMMSR SSSTNSLTTL PRLHFRDHIW  120
TYTQRYLAAE AVEEAAAAMI NAEENGAEQE DGTADGMRLV QLLIACAEAV ACRDKSHASA  180
LLSELRANAL VFGSSFQRVA SCFVQGLASR LALVQPLGAV GFVPSKLNAK DYALMDKKEE  240
ALRLVYEICP HIQFGHFVAN SSILEAFEGE SFVHVVDLGM TLGLPHGDQW RGLIHSLTTR  300
AGQPPVSRLR ITGVGLCADR LQIIGEELEA YADSLGLSVE FTCVESNLEN LKPEDIKLYE  360
GEVLVVNSIL QLHCVVKESR GALNSVLQMI HELSPKVLVL VEQDSSHNGP FFLGRFMEAL  420
HYYSAIFDSL DAMLPKYDTR RAKMEQFYFA EEIKNIISCE GPARVERHER VDQWRRRMSR  480
AGFQGAPIKM MAQAKQWLGK NKVCEGYTVV EEKGCLVLGW KSRPIVAASC WKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6816653126378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22702.1-v1.0-hybrid
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004309796.20.0PREDICTED: DELLA protein RGA2-like
TrEMBLA0A2P6P5500.0A0A2P6P550_ROSCH; Putative transcription factor GRAS family
STRINGXP_004309796.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-80RGA-like 1