PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22660.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | SBP | ||||||||
Protein Properties | Length: 381aa MW: 41035.2 Da PI: 9.672 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 138.8 | 1.5e-43 | 78 | 155 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls++k y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+ mrna22660.1-v1.0-hybrid 78 RCQVEGCNVDLSDVKAYYSRHKVCAMHSKTPTVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 155 6**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.7E-35 | 73 | 140 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.539 | 76 | 153 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.37E-42 | 77 | 158 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.3E-33 | 79 | 152 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGSTSLTTTT DSGGSSSSSP PNNNSTDDSL HGLKFGRKIY FEDGTLAPPK SGSSSSAGVK 60 KQRSSGGGGF VHHGQPPRCQ VEGCNVDLSD VKAYYSRHKV CAMHSKTPTV VVAGLEQRFC 120 QQCSRFHQLP EFDQGKRSCR RRLAGHNERR RKPQPGSMMS TRFGRLSSSI YENSNRVGSF 180 LMDFTAYPRD GRDAWATART SERPPANQTV TATGKFLQHQ WQSNPENNRS NLYLQGSAGG 240 TSYPGPGIPP GECVTGVTDS SCALSLLSSQ PWASRNRGVG TNAFLNTQGA PMAQSISNAG 300 PVNPFPTTSW GFKGNEAGSS SHEMLPDLGL GQISQPLNSH YSGELELSQQ GRRQQNMELG 360 NSRGYSRGYD SSSQQIHWSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 79 | 152 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22660.1-v1.0-hybrid |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979457 | 0.0 | JN979457.1 Fragaria x ananassa cultivar Allstar SQUAMOSA promoter binding protein-like protein (SPL9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004304380.2 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
TrEMBL | G9JWE9 | 0.0 | G9JWE9_FRAAN; SQUAMOSA promoter binding protein-like protein | ||||
STRING | XP_004304380.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-63 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | mrna22660.1-v1.0-hybrid |