PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | mrna22614.1-v1.0-hybrid | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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Family | C3H | ||||||||
Protein Properties | Length: 262aa MW: 27479.9 Da PI: 8.8134 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.5 | 1.1e-08 | 61 | 86 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ mrna22614.1-v1.0-hybrid 61 KTRLCNKYNSAEGCKFGDKCHFAHGE 86 8***********************96 PP | |||||||
2 | zf-CCCH | 37.5 | 4.1e-12 | 228 | 252 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y+t+lC++fa+ GtC +G+rC+FaHg mrna22614.1-v1.0-hybrid 228 YRTKLCDNFAK-GTCTFGERCHFAHG 252 89*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.362 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 100 | 3 | 22 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-4 | 6 | 20 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.1 | 9 | 20 | No hit | No description |
SuperFamily | SSF90229 | 2.49E-8 | 58 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-14 | 59 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.92 | 59 | 87 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0025 | 59 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-6 | 61 | 86 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00322 | 6.9E-12 | 132 | 202 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.0E-16 | 132 | 203 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.403 | 133 | 197 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 8.77E-15 | 135 | 202 | No hit | No description |
Pfam | PF00013 | 5.5E-12 | 135 | 199 | IPR004088 | K Homology domain, type 1 |
SuperFamily | SSF54791 | 1.31E-15 | 135 | 228 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-16 | 223 | 259 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.464 | 227 | 254 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.11E-8 | 227 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-8 | 227 | 253 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-9 | 228 | 252 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root | ||||
PO:0007134 | developmental stage | sporophyte vegetative stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MQLPRSTAGC PFGESCHFLH YVPGGYNAVA QVMNLAPPPQ SSRNFAGPPS HSNGSSAPTA 60 KTRLCNKYNS AEGCKFGDKC HFAHGERELG KPVSQSYGHD DPRAMAPAPG RMGNWMEPGH 120 APMQGPASSF GASSTAKISV DASLAGAIIG KGGVNSKHIC HQTGAKLAIR DHESDPNLRN 180 IELEGTFEQI QQASTLVREL IQSVLMSGPN KTPGRGASGA PAPPGSNYRT KLCDNFAKGT 240 CTFGERCHFA HGAAELRKPG M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | mrna22614.1-v1.0-hybrid |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011468049.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_011468050.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q69XQ3 | 5e-92 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A2P6RDK5 | 1e-173 | A0A2P6RDK5_ROSCH; Putative transcription factor C3H family | ||||
STRING | XP_004304369.1 | 0.0 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-64 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | mrna22614.1-v1.0-hybrid |