PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna22559.1-v1.0-hybrid
Organism
Fragaria vesca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NAC
Protein Properties Length: 354aa    MW: 40972.3 Da    PI: 4.8124
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna22559.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.61e-2291453127
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikev.diy...kvePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratk 79 
                              +G+rFhPtd el+ ++L+ k+++++  + +  i+e+ d+y    +ePwd+  k   ++++e + +yf++kr k ++ gkr nr++ 
  mrna22559.1-v1.0-hybrid   9 KGMRFHPTDVELIEYFLHDKADADQAGCYSSfIHECnDLYgekAMEPWDIWdKyggSTYEEGEPLYFYTKRIKLNSDGKRFNRKVG 94 
                              7**********************9966655449999888743357*****733455444566688********************* PP

                      NAM  80 sgyWkatgkdkevlsk..kgelvglkktLvfy..kgrapkgektdWvmheyr 127
                              sg+W+   ++  v+s+  + +++g+ + L +   kg    +++  W+mhey+
  mrna22559.1-v1.0-hybrid  95 SGTWSGEYSKDVVVSSqnGITKIGTMRNLRYEmiKG-CDATQNGAWLMHEYE 145
                              *****877766666654445569********94333.3344789*******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.8547162IPR003441NAC domain
SuperFamilySSF1019411.57E-229160IPR003441NAC domain
PfamPF023658.4E-169145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAAPVMQIKG MRFHPTDVEL IEYFLHDKAD ADQAGCYSSF IHECNDLYGE KAMEPWDIWD  60
KYGGSTYEEG EPLYFYTKRI KLNSDGKRFN RKVGSGTWSG EYSKDVVVSS QNGITKIGTM  120
RNLRYEMIKG CDATQNGAWL MHEYESAFDI EHDYVICALK RNPRRAQANQ EDAEITKKNS  180
VKKRKSASFV DHQSRKRKKK LKEEEIYEII DLEPSNMVKE ERKEETAYDD QGRSSCTQLP  240
EQQPYHHDQD NVTDYFSGRL GNNYDDGICL DDLIGPINSP YYKSFQYENQ LYHGDDSKFN  300
FMDYTNGGTS QLPENQLYHR SDDSKFNVMD YMNIGGMSQL PDDQATVDYL ENF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182199KRKSASFVDHQSRKRKKK
2194198RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapmrna22559.1-v1.0-hybrid
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004305000.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLA0A2P6R6W71e-127A0A2P6R6W7_ROSCH; Putative transcription factor NAM family
STRINGXP_004305000.10.0(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3257222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-14NAC-domain protein 101