PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

mrna22515.1-v1.0-hybrid

Organism

Fragaria vesca

Taxonomic ID

57918

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria

Family

MYB_related

Protein Properties

Length: 1216aa MW: 135541 Da PI: 9.6067

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
mrna22515.1-v1.0-hybrid	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.5e-07	39	74	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++ E +++++a +++G + Wk++a+ + +R +++ mrna22515.1-v1.0-hybrid 39 QWSKGELQRFYEAYRKYGQN-WKKVAAVVR-NRNIEMV 74 6***************88.******9.9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.34E-9	35	83	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.0E-4	39	75	IPR009057	Homeodomain-like
Pfam	PF00249	5.2E-6	39	79	IPR001005	SANT/Myb domain
CDD	cd00167	4.76E-4	40	74	No hit	No description
Pfam	PF06584	9.2E-34	637	737	IPR033471	DIRP domain
SMART	SM01135	2.1E-59	637	738	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009001	anatomy	fruit
PO:0007010	developmental stage	whole plant fruit ripening stage
PO:0007027	developmental stage	whole plant fruit formation stage 70% to final size

Sequence ? help Back to Top
Protein Sequence Length: 1216 aa Download sequence Send to blast
MAPTRKAKTV KRYSNLSEAS PGGKNKQGKR KFTDQLGPQW SKGELQRFYE AYRKYGQNWK 60 KVAAVVRNRN IEMVEALYNM NRAYLSLPEG TASVVGLIAM MTDHYNVMEG SESERESNDA 120 IRYSRKPQKR KLGKDSVSKD MFQPHSTASV DGCLSHLKRR RLDGNQPRAV GKRTPRFPVQ 180 YSSKKDDGEN YASPIRKGRK SEADNEYDVA KVAALLTEAS HRGGSPRLSQ TPYRRFTVQS 240 SQRMQPPSWK ARADLRDASM EEDCLEGSVG SRGAETGDYT RDSSSLMDME GVGTVEIRRG 300 KKVYGKKEKV KDIGNHQFDD GGEACSGTEE GLHVSTKGKT DIEVSDAKGD QFYSQVPRQE 360 CGKPYFGDDS AELDALEALH TLADLSLMMP ASTMESGSSM QLKDERTASE MEEKSNMPES 420 TSTSQFRNKN KLPGGKQREP IADSRTEGTN AKKSKLARDS TPIDINVVSE SEQLHSTSKS 480 WRRKRKPTVS KISNAEANID STVNEPSYSE VFGQEENKSV VKGRRTGQIS TPSKQWKSVR 540 PGDGSLNSDF GQTVSNVMVA TAEGRPTAKQ VHSPTKQSRR KRYLPRATVP KSSENILKTQ 600 LHKHSNSLQD RILYLKEKMS CCLSSHLVRR WCTFEWFYSA IDYPWFAKRE FEEYLNHVGL 660 GHIPRLTRVE WGVIRSSLGK PRRFSEHFLS EEREKLKQYR ESVRKHYAEL RTGVREGLPT 720 DLARPLSVGQ RVIALHPKTR EVHDGSVLTV DHDKCRVQFD RPEIGVEFVM EGYEADVRTR 780 LKVRMSLRSP PSGADMTARL HPSGLQQRPR SLSLPGESAE FQFPTRSTLF EVLGDLAGKQ 840 DVDCMPSNPL DNMPEALKRQ NIAFDKFPLT LPHMNGNLNF ERPVMNVSSG LLEKDPSPMN 900 TSLPQGKGDT NHIISQPKGA SVDIAGAQTA VSQPGVVAHN QAREADIQAL SDLNRALDKK 960 KALLMELSTI NNILENQNSG ECSLKDCDKK HYATESSALL NLRHRNTYPG NTLPPSLKYP 1020 TNSTVYGSLP SSFDISTSQE SGSSVAEIVE VSRLKAHTLV NAAVQAMSSR KEGEEAYVRV 1080 RRALDSINIQ NLTSDSRSAV NRTQEQVNGT LGHRNQLTSV ASEPNTSDSS GPKLHTETDK 1140 NESQMLSEVI TACVMAMNMI QTCTERQYPP AVVAQVLDYA VTSLHPRCPQ NVGMYREIQM 1200 CMGRIKTQIL ALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1216 aa Download sequence Send to blast

MAPTRKAKTV KRYSNLSEAS PGGKNKQGKR KFTDQLGPQW SKGELQRFYE AYRKYGQNWK  60
KVAAVVRNRN IEMVEALYNM NRAYLSLPEG TASVVGLIAM MTDHYNVMEG SESERESNDA  120
IRYSRKPQKR KLGKDSVSKD MFQPHSTASV DGCLSHLKRR RLDGNQPRAV GKRTPRFPVQ  180
YSSKKDDGEN YASPIRKGRK SEADNEYDVA KVAALLTEAS HRGGSPRLSQ TPYRRFTVQS  240
SQRMQPPSWK ARADLRDASM EEDCLEGSVG SRGAETGDYT RDSSSLMDME GVGTVEIRRG  300
KKVYGKKEKV KDIGNHQFDD GGEACSGTEE GLHVSTKGKT DIEVSDAKGD QFYSQVPRQE  360
CGKPYFGDDS AELDALEALH TLADLSLMMP ASTMESGSSM QLKDERTASE MEEKSNMPES  420
TSTSQFRNKN KLPGGKQREP IADSRTEGTN AKKSKLARDS TPIDINVVSE SEQLHSTSKS  480
WRRKRKPTVS KISNAEANID STVNEPSYSE VFGQEENKSV VKGRRTGQIS TPSKQWKSVR  540
PGDGSLNSDF GQTVSNVMVA TAEGRPTAKQ VHSPTKQSRR KRYLPRATVP KSSENILKTQ  600
LHKHSNSLQD RILYLKEKMS CCLSSHLVRR WCTFEWFYSA IDYPWFAKRE FEEYLNHVGL  660
GHIPRLTRVE WGVIRSSLGK PRRFSEHFLS EEREKLKQYR ESVRKHYAEL RTGVREGLPT  720
DLARPLSVGQ RVIALHPKTR EVHDGSVLTV DHDKCRVQFD RPEIGVEFVM EGYEADVRTR  780
LKVRMSLRSP PSGADMTARL HPSGLQQRPR SLSLPGESAE FQFPTRSTLF EVLGDLAGKQ  840
DVDCMPSNPL DNMPEALKRQ NIAFDKFPLT LPHMNGNLNF ERPVMNVSSG LLEKDPSPMN  900
TSLPQGKGDT NHIISQPKGA SVDIAGAQTA VSQPGVVAHN QAREADIQAL SDLNRALDKK  960
KALLMELSTI NNILENQNSG ECSLKDCDKK HYATESSALL NLRHRNTYPG NTLPPSLKYP  1020
TNSTVYGSLP SSFDISTSQE SGSSVAEIVE VSRLKAHTLV NAAVQAMSSR KEGEEAYVRV  1080
RRALDSINIQ NLTSDSRSAV NRTQEQVNGT LGHRNQLTSV ASEPNTSDSS GPKLHTETDK  1140
NESQMLSEVI TACVMAMNMI QTCTERQYPP AVVAQVLDYA VTSLHPRCPQ NVGMYREIQM  1200
CMGRIKTQIL ALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	131	RKPQKRKL
2	157	161	KRRRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	mrna22515.1-v1.0-hybrid

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004302418.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X1
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	A0A2P6R700	0.0	A0A2P6R700_ROSCH; Putative transcription factor MYB-HB-like family
STRING	XP_004302418.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1783	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-172	DNA binding

Link Out ? help Back to Top
Phytozome	mrna22515.1-v1.0-hybrid

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]